BtaEX6008364 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4887255-4896969:-
Coord C1 exon
chr2:4896785-4896969
Coord A exon
chr2:4888386-4888507
Coord C2 exon
chr2:4887255-4887397
Length
122 bp
Sequences
Splice sites
3' ss Seq
ACCTGTACGCCTCTTTGCAGTGG
3' ss Score
6.92
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ACATACACAGGCTCCATCCTGGTGGCGGTGAACCCGTTCCAGGTGCTGCCCCTCTACACCGTGGAGCAGGTCCAGCTGTACTACAGGCACCATGTGGGCGAGCTGCCGCCGCATATCTTTGCCATTGCCAACAGCTGCTACTTCAACATGAAGAAGAACAAGAGGGACCAGTGTTGCATTATCAG
Seq A exon
TGGCGAGTCTGGGGCAGGGAAAACAGAGACCACCAAGCTCATCCTGCAGTTCCTGGCCACCATCAGCGGCCAGCATTCGTGGATTGAGCAGCAGGTCCTGGAAGCCAACCCCATCCTGGAAG
Seq C2 exon
CCTTTGGAAACGCCAAGACAATCCGAAACGACAACTCAAGCCGCTTCGGGAAGTACATTGACATCTACTTCAACGCCAGTGGGGTGATCGAGGGGGCGCGCATCGAGCAGTTTCTCCTGGAGAAATCCCGGGTCTGCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.2=100)
A:
PF0006316=Myosin_head=FE(6.2=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGGTCCAGCTGTACTA
R:
CCAGGAGAAACTGCTCGATGC
Band lengths:
243-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]