DreEX0048771 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3116398-3119134:+
Coord C1 exon
chr18:3116398-3116582
Coord A exon
chr18:3117683-3117804
Coord C2 exon
chr18:3118992-3119134
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCCTGTTCGTTTCCCATCAGTGG
3' ss Score
7.1
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
ACGTATACGGGGTCCATCTTAGTGGCCGTCAACCCGTATCAGCTGCTTCCCATTTACACAGCAGACCAGATTCGCCTTTACACCAATAAAAAGATTGGAGAAATGCCTCCACACATCTTCGCCATCGCAGACAACTGCTATTTCAACATGCAGCGCAACAACAAAGACCAGTGCTGCATCATCAG
Seq A exon
TGGTGAATCTGGTGCTGGAAAGACAGAAAGCACCAAACTGATCCTGCAGTTTCTGGCAGCCATCAGCGGGCAGCACTCCTGGATCGAGCAGCAGGTGCTGGAGGCAAATCCCATCCTGGAAG
Seq C2 exon
CCTTTGGAAATGCTAAAACCATCCGAAACGACAACTCAAGCCGCTTTGGGAAGTACATCGACATCCACTTCAACAAAAGAGGAGCCATAGAGGGAGCAAAGATCGAACAGTACCTTCTGGAGAAATCCAGAGTGTGTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.2=100)
A:
PF0006316=Myosin_head=FE(6.2=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAACCCGTATCAGCTGCTT
R:
TTGCTCCCTCTATGGCTCCTC
Band lengths:
257-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]