MmuEX6012384 @ mm10
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98097388-98098371:-
Coord C1 exon
chr7:98098187-98098371
Coord A exon
chr7:98097613-98097734
Coord C2 exon
chr7:98097388-98097530
Length
122 bp
Sequences
Splice sites
3' ss Seq
GTGACTCCCACCCTCTGCAGCGG
3' ss Score
8.53
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ACGTACACAGGTTCCATCCTGGTGGCCGTGAACCCCTACCAGCTGCTCTCCATCTACTCGCCAGAGCACATCCGCCAGTACACCAACAAGAAGATAGGGGAGATGCCCCCCCACATCTTCGCCATTGCTGACAACTGCTACTTCAACATGAAACGCAACAACCGGGACCAGTGCTGTATTATCAG
Seq A exon
CGGGGAGTCGGGAGCTGGCAAGACAGAGAGCACAAAGTTGATCCTGCAGTTCCTGGCAGCCATCAGTGGACAGCACTCATGGATCGAGCAGCAGGTGCTGGAGGCCACCCCGATCCTGGAAG
Seq C2 exon
CATTTGGGAACGCCAAGACCATCCGCAACGACAACTCTAGCCGCTTTGGCAAGTACATTGACATCCACTTTAACAAGCGTGGTGCCATCGAGGGCGCCAAAATAGAGCAATACCTGCTGGAGAAGTCACGTGTCTGCCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'22-19,'22-18,24-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.2=100)
A:
PF0006316=Myosin_head=FE(6.2=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCGCCAGTACACCAACAA
R:
GACACGTGACTTCTCCAGCAG
Band lengths:
251-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types