DreEX6084404 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22215605-22218245:+
Coord C1 exon
chr21:22215605-22215789
Coord A exon
chr21:22215879-22216000
Coord C2 exon
chr21:22218103-22218245
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTACCATGTTGCGTGTTCAGCGG
3' ss Score
8.27
5' ss Seq
AAGGTTAGG
5' ss Score
6.06
Exon sequences
Seq C1 exon
ACATATACTGGATCAATCCTGGTAGCGGTGAATCCATACCAGCTTCTGCCCATCTACACCCCCGATCAGATCCGGCTCTACACCAACAAAAAGATCGGAGAGATGCCGCCGCACATCTTTGGCATTGCAGACAACTGCTACTTCAGCATGCAAAGAAACAAGAAGGACCAGTGCTGCATCATCAG
Seq A exon
CGGTGAGTCTGGAGCTGGAAAGACGGAGAGCACCAAGCTCATCCTGCAGTTCCTGGCAGCTATAAGTGGCCAACACTCCTGGATTGAGCAGCAGGTTCTGGAGGCCAACCCGATTTTGGAAG
Seq C2 exon
CATTTGGTAATGCCAAGACAATACGCAATGACAACTCAAGCCGGTTTGGAAAATATGTTGATATTCACTTCAACAAGCGAGGAGCTATTGAGGGGGCAAAGATCGAGCAGTACCTGCTGGAGAAATCAAGAGTTTGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.5=100)
A:
PF0006316=Myosin_head=FE(6.1=100)
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGTAGCGGTGAATCCAT
R:
GCTCCTCGCTTGTTGAAGTGA
Band lengths:
254-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]