GgaEX1038172 @ galGal3
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198151209-198155451:-
Coord C1 exon
chr1:198155267-198155451
Coord A exon
chr1:198154245-198154366
Coord C2 exon
chr1:198151209-198151351
Length
122 bp
Sequences
Splice sites
3' ss Seq
ATATTCTGTTGTCACTGCAGTGG
3' ss Score
6.58
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ACATACACTGGTTCAATACTGGTGGCAGTAAACCCCTACCAGCTTCTACCCATCTATTCACCGGAGCAGATCCGCCTGTACACCAACAAAAAGATTGGGGAAATGCCACCACACATCTTTGCGATCGCTGACAACTGCTACTTCAACATGCAGCGCAACAACAAGGATCAGTGTTGTATCATAAG
Seq A exon
TGGTGAATCCGGGGCAGGGAAAACTGAAAGCACAAAACTGATTCTTCAGTTCCTGGCAGCGATCAGTGGTCAACACTCCTGGATTGAGCAGCAGGTCCTGGAGGCAAATCCCATCTTGGAAG
Seq C2 exon
CTTTTGGGAATGCAAAGACGATCCGTAATGACAACTCCAGCCGATTTGGGAAGTACATTGACATCCACTTCAACAAAAGGGGAGCCATCGAGGGGGCCAAGATTGAGCAGTACCTGCTGGAGAAGTCCCGGGTCTGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.2=100)
A:
PF0006316=Myosin_head=FE(6.2=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCATCTATTCACCGGAGCA
R:
GTACTGCTCAATCTTGGCCCC
Band lengths:
251-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]