BtaEX6060091 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57346606-57347825:+
Coord C1 exon
chr15:57346606-57346790
Coord A exon
chr15:57347469-57347590
Coord C2 exon
chr15:57347683-57347825
Length
122 bp
Sequences
Splice sites
3' ss Seq
TGCCTGTGTCTCCTCTGCAGTGG
3' ss Score
9.45
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ACCTACACGGGCTCCATCTTGGTGGCTGTGAACCCCTACCAGCTGCTCTCTATCTACTCGCCAGAACACATCCGCCAGTATACCAACAAGAAGATTGGGGAGATGCCCCCCCACATCTTTGCCATTGCTGACAATTGCTACTTCAATATGAAGCGCAACAGCCGTGACCAGTGCTGCATCATCAG
Seq A exon
TGGGGAGTCTGGGGCAGGGAAGACAGAGAGCACGAAGCTGATCCTGCAGTTCCTGGCGGCCATCAGCGGGCAGCACTCGTGGATTGAACAGCAGGTGCTGGAAGCAACTCCCATCTTGGAAG
Seq C2 exon
CGTTTGGGAATGCTAAGACCATCCGCAATGACAACTCAAGCCGCTTCGGGAAGTACATCGACATCCACTTCAACAAGCGGGGCGCCATCGAGGGCGCCAGGATCGAGCAGTACCTGCTGGAGAAGTCACGAGTCTGTCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.2=100)
A:
PF0006316=Myosin_head=FE(6.2=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACGGGCTCCATCTTGGT
R:
GTCGATGTACTTCCCGAAGCG
Band lengths:
245-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]