RnoALTA0025433-2/7 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24778337-24800613:-
Coord C1 exon
chr18:24800492-24800613
Coord A exon
chr18:24780795-24780830
Coord C2 exon
chr18:24778337-24780794
Length
36 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GATTTCCCGAGGCTGGCAAGGGT
3' ss Score
-7.22
Exon sequences
Seq C1 exon
TGGTGAGTCTGGCGCTGGGAAGACCGAGACCACCAAGCTCATCCTTCAGTTCCTGGCCACAGTCAGCGGCCAGCACTCGTGGATCGAGCAGCAGGTCCTGGAGGCCAACCCCATCCTGGAAG
Seq A exon
GGTTCCTGAACTAGTTACCACTTCTTTTCTTGCCAG
Seq C2 exon
TCTAACAGGGTGGGAAAGTCCGAGCCTTAGGACCCAGTTTCTGTTCTGGTTTTTTCCCTCCTGACCGCCATGGGTTGTTACTTGCCTTGAGTTGGGAACGTTTGCATTGACACCTGTAAATGTATTCATCCTTTTAATTTATGTAAGGTTTTTGTACTCAATTCTTTAAGAAATGACAAATTTTGGTTTTCTACTGTTCAGTGAGAACATTAGGCCCCAGCAACACGTCATTGTGTAAAGAGAAATAAAAGTGCTGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACCACGGGCTCTCGGGACATGCTCAGTCAATAACAGCTGGCTACACCCAGGGTTCACCACAGTGACCCTTACCAACCTGCCCATGGCTTGTCTCTTTACAGGGTGTCATCTCCCCTAGTACCATAGGTCGAAAGTAGCCTCCAGAGTCTTGGAGACAGAAGGGAAGCTAAGCACCATGCCCAGATTCCTGTCAGTCATGCTAGCCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-7-33,7-32,7-31,7-30,7-29,7-28,7-27-2/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCATCCTTCAGTTCCTGGC
R:
TCCTAAGGCTCGGACTTTCCC
Band lengths:
118-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]