RnoEX0057480 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24782254-24784885:-
Coord C1 exon
chr18:24784716-24784885
Coord A exon
chr18:24784194-24784331
Coord C2 exon
chr18:24782254-24782354
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCCTCACTGCTTCTTTGCAGCCA
3' ss Score
8.82
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
GCTTTCTGGAGAAGAATCGAGATGTGCTGAGCACTGACATCCTCATCCTGATTCACTCCTCAAAAAACAAGTTCCTGAAGGAGATATTTAACCTGGACTTACCACAGACAAAGCTGGGGCACGGCACCATCTGCCAGGTGAAGACGAAGACAGGAGGCCAGATCTTCAAG
Seq A exon
CCATCAGACTCCACCAAGCGCTCCGTCACCCTCTCGAGCCAGTTCAAGCAGTCTCTGGAGCAGCTGATGAAAATCCTGACCAATTGCCAGCCCTACTTTGTCCGCTGCATCAAACCCAATGAGTACAAGAAACCACTG
Seq C2 exon
AAGAAATCGCCGCCCTCGTCATTGACAATGGCTCCGGCATGTGCAAAGCTGGCTTTGCTGGGGACGACGCCCCCAGGGCCGTGTTTCCTTCCATCGTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'21-18,'21-17,22-18
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.2=100)
A:
PF0006316=Myosin_head=FE(6.6=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAGCACTGACATCCTCA
R:
CCCGACGATGGAAGGAAACAC
Band lengths:
247-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]