HsaEX6015448 @ hg19
Exon Skipping
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128345967-128350521:+
Coord C1 exon
chr2:128345967-128346130
Coord A exon
chr2:128347667-128347804
Coord C2 exon
chr2:128350369-128350521
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGCTTCCATTCACAGTCT
3' ss Score
9.85
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
GCTTCCTGGAGAAGAACCGAGACGTGCTGAGCACAGATATCCTCACCCTGGTTTACTCCTCCAAAAACAAGTTTCTGAGGGAGATATTCAACTTGGAGTTAGCAGAGACCAAGCTGGGCCATGGGACCATCCGCCAGGCAAAGGCAGGAAACCATCTCTTCAAG
Seq A exon
TCTGCAGACTCAAATAAACGGCCCTCCACCTTAGGAAGCCAGTTCAAACAGTCTCTGGACCAGCTGATGAAAATCCTGACCAACTGCCAGCCTTACTTCATCCGCTGCATCAAACCTAATGAGTACAAGAAGCCGCTG
Seq C2 exon
CTGTTCGACCGGGAGCTGTGCCTGCGGCAGCTGCGATACTCGGGCATGATGGAGACCGTGCACATCCGCAAGTCGGGCTTCCCCATCCGCTACACGTTCGAGGAGTTCTCGCAGAGGTTCGGCGTGTTGCTGCCCAACGCCATGCGGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.9=100)
A:
PF0006316=Myosin_head=FE(6.6=100)
C2:
PF0006316=Myosin_head=FE(7.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAACCGAGACGTGCTGAG
R:
TCCTCGAACGTGTAGCGGAT
Band lengths:
258-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)