MmuEX6000733 @ mm10
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:31990138-31994947:-
Coord C1 exon
chr18:31994784-31994947
Coord A exon
chr18:31994256-31994393
Coord C2 exon
chr18:31990138-31990290
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCCTTGCTGCTTCTTTGCAGTCA
3' ss Score
8.62
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
GCTTTCTGGAGAAGAATCGAGATGTGCTGAGCACAGATATCCTAATCCTGATTCATTCCTCGAAAAACAAGTTTCTGAAGGAGATATTTAACGTGGACTCATCACAGACTAAGCTGGGGCACGGCACCATCTGCCAGGTGAAGGCAGGAAGCCAGCTCTTCAAG
Seq A exon
TCATCAGACTCCATCAAGCGCCCCGTCACCCTCGCGAGCCAGTTCAAGCAGTCTCTGGACCAGCTGATGAGAATCCTGACCAACTGCCAGCCCTATTTTGTCCGCTGCATTAAACCCAATGAGTACAAGAAGCCACTG
Seq C2 exon
CTGTTTGACCGAGAGCTGTGCATTCAGCAGCTGCGTTATTCCGGCATGATGGAGACTGTGCACATCCGCAAGTCAGGTTTTCCCATCCGCTACACATTTGATGAGTTCTCACAGAGATTCCGTGTGCTGCTGCCCAGCCCGGAGCGTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'19-25,'19-23,20-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.9=100)
A:
PF0006316=Myosin_head=FE(6.6=100)
C2:
PF0006316=Myosin_head=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATCGAGATGTGCTGAGCA
R:
GCGGATGGGAAAACCTGACTT
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types