DreEX6022062 @ danRer10
Exon Skipping
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28079663-28080414:+
Coord C1 exon
chr6:28079663-28079826
Coord A exon
chr6:28080026-28080166
Coord C2 exon
chr6:28080256-28080414
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCTCACCCCATCAGCAA
3' ss Score
5.71
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
GTTTCCTTGAGAAGAACCGAGATGCTCTGAGTAGTGACATCATCCAGTTGATACACACATCTTCCAATAAGCTCCTGAAGCAGATATTCCACAGTGAGATCAGCACCATAGAGGGGAAAACTAGCATCAACCACACCATCGTCACCCCAAAAAGCTCACTTCGG
Seq A exon
CAAACAGCAGACACAAAGAAGCAAGTTCCAACATTAACTGGTCAGTTTCGCCAGTCGCTTGACTCTTTGATGAAGACTCTAACTGCCTGTCAGCCTTTCTTCATTCGCTGCATTAAACCCAACGACTTCAAGAAGCCTATG
Seq C2 exon
CTCTTTGACAGGGAGCTGTGTATCCGTCAGCTTCGTTACTCAGGAATGATGGAGACTATCCGCATCAGGAAGGCTGGATATCCCATCCGCCACACATTTGATGAGTTTCTGGAGCGTTACCGTGTGCTGCTCAAGTCCACTGTTTGTGATCCCCAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(9.5=94.5)
A:
PF0006316=Myosin_head=FE(6.7=100)
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Skipping Isoform:
ENSDART00000143218fB555
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAGATGCTCTGAGTAGTGA
R:
CAAATGTGTGGCGGATGGGAT
Band lengths:
249-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]