BtaEX6008373 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4865957-4869864:-
Coord C1 exon
chr2:4869761-4869864
Coord A exon
chr2:4867944-4868081
Coord C2 exon
chr2:4865957-4866109
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTGCCCTGTGCTCTGTCTAGTCT
3' ss Score
6.62
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
GCTTCCTGGAGAAGAATCGGGATGTGCTGAACAGGGACATCCTCGCCCTGGTCCACTCCTCCCAAAACAAGTTCCTGCGGGAGATATTTGGGCTGGAGTCGGAG
Seq A exon
TCTGCAGACTCCAGCAAGCGGCCCTCCACCTTGGCTGGCCAGTTCAAGCAGTCTCTGGACCAGCTGATGAAAATCCTCACCAATTGCCAGCCCTACTTCATCCGTTGCATCAAACCTAATGACTACAAGAAGCCGCTG
Seq C2 exon
CTCTTCGACCGGGAGCTGTGCATCCAGCAGCTGCGCTACTCGGGGATGATGGAGACCGTGCACATCCGCAAATCCGGCTTCCCCATCCGCTACTCGTTCGAGGAGTTCTCACAGAGGTTCCGCGTCCTGCTGCCCAGTGCCGTGCGCACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803-'16-17,'16-16,18-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.1=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGAGAAGAATCGGGATGT
R:
GACGCGGAACCTCTGTGAGAA
Band lengths:
227-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]