DreEX0048760 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3128684-3134002:+
Coord C1 exon
chr18:3128684-3128790
Coord A exon
chr18:3132127-3132264
Coord C2 exon
chr18:3133844-3134002
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTCCTGGCACACAGGGA
3' ss Score
6.56
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTTTTCTGGAGAAGAATCGAGACACTCTGCATGGTGACATCATTCAGCTCGTTCACTCCTCCAAAAACAAGTTCATCAAGCAGATCTTTCAGGCGGATGTCGCTATG
Seq A exon
GGAGCAGAGACCCGCAAGCGTTCTCCGACTCTGAGCAGTCAGTTCAAGCGTTCTCTGGAGCTGTTAATGCGCACACTGAGCGTCTGCCAGCCGTTCTTCGTCCGCTGCATCAAACCCAATGAATACAAGAAACCCATG
Seq C2 exon
CTCTTTGATCGTGAGCTGTGTGTGCGGCAGCTCCGTTATTCTGGCATGATGGAGACCATCCGGATTCGCCGGGCCGGATACCCCATTCGATACACGTTTGTGGAGTTTGTGGACCGGTACCGTGTTTTAATGCCTGGAGTGAAACCTGCTTACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'16-16,'16-15,18-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGACACTCTGCATGGTGAC
R:
TAAGCAGGTTTCACTCCAGGC
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]