MmuEX6012394 @ mm9
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105232018-105239638:-
Coord C1 exon
chr7:105239532-105239638
Coord A exon
chr7:105233894-105234031
Coord C2 exon
chr7:105232018-105232176
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTCCTCTGCCACAGGGT
3' ss Score
11.35
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCTTCCTGGAGAAGAACCGAGACACCCTGCATGGGGACATCATCCAGCTGGTCCACTCTTCCCGGAACAAGTTCATAAAGCAGATTTTCCAAGCTGACGTTGCCATG
Seq A exon
GGTGCCGAGACCAGGAAGCGCTCGCCTACACTCAGCAGCCAGTTCAAGCGGTCTCTGGAGCTGCTGATGCGCACACTGGGCGCCTGCCAGCCCTTCTTTGTGCGTTGTATCAAACCCAATGAGTTCAAGAAGCCCATG
Seq C2 exon
CTCTTCGACCGGCACTTGTGTGTACGCCAGCTGCGATATTCGGGCATGATGGAGACAATCCGCATCCGCCACGCAGGCTACCCCATTCGCTACAGCTTTGTGGAGTTTGTGGAGCGCTACCGGGTACTGCTGCCTGGTGTGAAGCCAGCATACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'24-24,'24-22,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGAACCGAGACACCCT
R:
CTTCACACCAGGCAGCAGTAC
Band lengths:
244-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: