GgaEX6006868 @ galGal3
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198134631-198144824:-
Coord C1 exon
chr1:198144718-198144824
Coord A exon
chr1:198137524-198137661
Coord C2 exon
chr1:198134631-198134789
Length
138 bp
Sequences
Splice sites
3' ss Seq
GCTCTGCTGCGGTTTTGCAGGGA
3' ss Score
8.4
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTTTCTTGGAGAAAAACAGGGACACGCTGCATGGAGACATCATTCAGCTGGTGCATTCATCAAAAAACAAATTCATCAAACAGATTTTCCAAGCAGATGTGGCTATG
Seq A exon
GGAGCGGAGACGAGGAAGCGCTCGCCGACTCTCAGCAGCCAGTTCAAGCGGTCCCTGGAGCTGTTGATGAGGACTCTCAGCGTCTGCCAGCCATTTTTTGTCCGCTGCATCAAGCCCAATGAGTACAAGAAGCCCATG
Seq C2 exon
CTGTTTGACCGGGAGCTGTGCGTCCGTCAGCTGAGGTACTCAGGGATGATGGAGACCATTCGGATCCGCCGGGCTGGCTACCCCATCCGCTACACATTTGTGGAGTTTGTGGACCGATACCGGGTGCTCATGCCTGGGGTGAAGCCAGCATACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'13-15,'13-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAAAACAGGGACACGC
R:
CTTGTATGCTGGCTTCACCCC
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]