BtaEX6060081 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57356304-57365087:+
Coord C1 exon
chr15:57356304-57356410
Coord A exon
chr15:57362464-57362601
Coord C2 exon
chr15:57364929-57365087
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACTGTGGTCCATCCCCCCAGGGC
3' ss Score
10.11
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCTTCCTGGAGAAGAACCGGGACACTCTGCATGGAGACATCATCCAGCTGGTGCACTCCTCCAGGAACAAGTTCATCAAGCAGATCTTCCAGGCCGATGTTGCCATG
Seq A exon
GGCGCCGAGACCAGGAAGCGCTCGCCCACACTCAGCAGCCAGTTTAAGCGGTCGCTGGAGCTGCTGATGCGGACACTGGGTGCCTGCCAGCCCTTCTTCGTGCGCTGCATCAAGCCCAATGAGTTCAAGAAGCCCATG
Seq C2 exon
CTGTTCGACCGGCACCTGTGTGTGCGCCAGCTGCGGTACTCGGGCATGATGGAGACCATCCGCATCCGCCGAGCCGGCTACCCCATCCGCTACAGCTTCGTGGAGTTTGTGGAGCGGTACCGAGTGTTGCTGCCTGGCGTGAAGCCGGCCTACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGAACCGGGACACTCT
R:
CTTGTAGGCCGGCTTCACG
Band lengths:
256-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]