DreEX0048775 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22242643-22245314:+
Coord C1 exon
chr21:22242643-22242749
Coord A exon
chr21:22243815-22243952
Coord C2 exon
chr21:22245177-22245314
Length
138 bp
Sequences
Splice sites
3' ss Seq
GGGGATTTGTGTGTTTTCAGGGA
3' ss Score
7.5
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTTTCCTGGAGAAGAACCGAGACAGTCTCCACAGTGACATCATCCAACTCGTCCATTCATCCAAAAACAAGTTCATCAAGCAGATCTTCCAAGCTGATGTTGCCATG
Seq A exon
GGAATGGAGACGAGGAAACGCTCGCCGACTCTCAGCAGTCAGTTTAAGCGCTCACTGGAACTGCTCATGAGGACGCTGAGCGTCTGTCAGCCTTTCTTTGTGCGCTGCATCAAACCCAACGAGCTCAAAAAGCCCATG
Seq C2 exon
ATGTTTGATAGAGGACTGTGTGTCAGGCAGTTGCGCTACTCTGGGATGATGGAGACGATCCGCATACGCAGAGCTGGATATCCCATACGCTATACCTTCGCTGAGTTCGTGGACCGCTATCGGGTGCTAATGCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'15-16,'15-15,18-16
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.064 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGGAGAAGAACCGAGACA
R:
CCAGGCATTAGCACCCGATAG
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]