RnoEX6058335 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24784194-24789515:-
Coord C1 exon
chr18:24789380-24789515
Coord A exon
chr18:24784716-24784885
Coord C2 exon
chr18:24784194-24784331
Length
170 bp
Sequences
Splice sites
3' ss Seq
CCTGATGTCCCTCCCCACAGGCT
3' ss Score
11.43
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGGACAGATGTCACTATGCTGCAGAAACTGAACAGCATCCATGCCAACAACAAGTCCTTCCTGAGACCCAAGAGCATCCATGACACCCGATTTGGGATCGCACACTTTGCGGGCGATGTATACTACCAGGCAGAAG
Seq A exon
GCTTTCTGGAGAAGAATCGAGATGTGCTGAGCACTGACATCCTCATCCTGATTCACTCCTCAAAAAACAAGTTCCTGAAGGAGATATTTAACCTGGACTTACCACAGACAAAGCTGGGGCACGGCACCATCTGCCAGGTGAAGACGAAGACAGGAGGCCAGATCTTCAAG
Seq C2 exon
CCATCAGACTCCACCAAGCGCTCCGTCACCCTCTCGAGCCAGTTCAAGCAGTCTCTGGAGCAGCTGATGAAAATCCTGACCAATTGCCAGCCCTACTTTGTCCGCTGCATCAAACCCAATGAGTACAAGAAACCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'11-23,'11-16,21-23=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.6=100)
A:
PF0006316=Myosin_head=FE(8.2=100)
C2:
PF0006316=Myosin_head=FE(6.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGGAGTAGCAGCAGAG
R:
GTACTTGCGTTCAGGAGGAGC
Band lengths:
249-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]