MmuEX6000732 @ mm9
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:32153910-32157812:-
Coord C1 exon
chr18:32157677-32157812
Coord A exon
chr18:32154438-32154601
Coord C2 exon
chr18:32153910-32154047
Length
164 bp
Sequences
Splice sites
3' ss Seq
TAGCCCTGATGTCCCCACAGGCT
3' ss Score
7.29
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGGACAGATGTCACTATGCTGCAGAAACTGAACAGTATCCATGCCAACAACAAGTCCTTCCTGAGCCCCAGGAGCATCCATGACACCCGATTTGGGATCGCACACTTCGCGGGCGATGTATACTACCAGGCAGAAG
Seq A exon
GCTTTCTGGAGAAGAATCGAGATGTGCTGAGCACAGATATCCTAATCCTGATTCATTCCTCGAAAAACAAGTTTCTGAAGGAGATATTTAACGTGGACTCATCACAGACTAAGCTGGGGCACGGCACCATCTGCCAGGTGAAGGCAGGAAGCCAGCTCTTCAAG
Seq C2 exon
TCATCAGACTCCATCAAGCGCCCCGTCACCCTCGCGAGCCAGTTCAAGCAGTCTCTGGACCAGCTGATGAGAATCCTGACCAACTGCCAGCCCTATTTTGTCCGCTGCATTAAACCCAATGAGTACAAGAAGCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.6=100)
A:
PF0006316=Myosin_head=FE(7.9=100)
C2:
PF0006316=Myosin_head=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAGATGTCACTATGCTGC
R:
TGGGTTTAATGCAGCGGACAA
Band lengths:
254-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: