DreEX6022063 @ danRer10
Exon Skipping
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28079439-28080166:+
Coord C1 exon
chr6:28079439-28079574
Coord A exon
chr6:28079663-28079826
Coord C2 exon
chr6:28080026-28080166
Length
164 bp
Sequences
Splice sites
3' ss Seq
GAAATTTACTGTGCATATAGGTT
3' ss Score
4.4
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GGCACAGATGCTACAATGCTCAACAAGATGAATCAGCATCATGGAAAGGGTGATATCTACATGCCACCAAAGAACAATCACGACACACAGTTTGGAATCCGGCATTTTGCTGGAGTTGTCCACTATGACTCCAAAG
Seq A exon
GTTTCCTTGAGAAGAACCGAGATGCTCTGAGTAGTGACATCATCCAGTTGATACACACATCTTCCAATAAGCTCCTGAAGCAGATATTCCACAGTGAGATCAGCACCATAGAGGGGAAAACTAGCATCAACCACACCATCGTCACCCCAAAAAGCTCACTTCGG
Seq C2 exon
CAAACAGCAGACACAAAGAAGCAAGTTCCAACATTAACTGGTCAGTTTCGCCAGTCGCTTGACTCTTTGATGAAGACTCTAACTGCCTGTCAGCCTTTCTTCATTCGCTGCATTAAACCCAACGACTTCAAGAAGCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=0.073 C2=0.085
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.6=100)
A:
PF0006316=Myosin_head=PD(9.5=94.5)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCATCATGGAAAGGGTGA
R:
AGGCTTCTTGAAGTCGTTGGG
Band lengths:
242-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]