DreEX6063713 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3127740-3132264:+
Coord C1 exon
chr18:3127740-3127875
Coord A exon
chr18:3128684-3128790
Coord C2 exon
chr18:3132127-3132264
Length
107 bp
Sequences
Splice sites
3' ss Seq
TAATGTGAATGTGTGTGCAGGTT
3' ss Score
5.64
5' ss Seq
ATGGTAACA
5' ss Score
4.87
Exon sequences
Seq C1 exon
GGCACAGACACCACCATGCTGAACAAACTCAACTCTCAACACAAGCTCAACACAAACTACATCCCACCCAAAAACACCTATGAAACACAGTTCGGCATCCAGCACTTTGCTGGAGTGGTGTACTACGAGACCAGAG
Seq A exon
GTTTTCTGGAGAAGAATCGAGACACTCTGCATGGTGACATCATTCAGCTCGTTCACTCCTCCAAAAACAAGTTCATCAAGCAGATCTTTCAGGCGGATGTCGCTATG
Seq C2 exon
GGAGCAGAGACCCGCAAGCGTTCTCCGACTCTGAGCAGTCAGTTCAAGCGTTCTCTGGAGCTGTTAATGCGCACACTGAGCGTCTGCCAGCCGTTCTTCGTCCGCTGCATCAAACCCAATGAATACAAGAAACCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'15-15,'15-13,16-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACACCACCATGCTGAAC
R:
TTTGATGCAGCGGACGAAGAA
Band lengths:
247-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]