GgaEX1038163 @ galGal4
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192389031-192397096:-
Coord C1 exon
chr1:192396961-192397096
Coord A exon
chr1:192396225-192396331
Coord C2 exon
chr1:192389031-192389168
Length
107 bp
Sequences
Splice sites
3' ss Seq
GTTGTCCCATTATCCTTCAGGTT
3' ss Score
10.73
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GGTACAGATGCCACGATGTTACACAAGCTGAACTCCCAGCACAAGCTGAACACCAACTACATTCCTCCAAAGAATAACTATGAAACCCAGTTTGGCATTAATCATTTTGCTGGAATTGTTTACTACGAAACAAAAG
Seq A exon
GTTTCTTGGAGAAAAACAGGGACACGCTGCATGGAGACATCATTCAGCTGGTGCATTCATCAAAAAACAAATTCATCAAACAGATTTTCCAAGCAGATGTGGCTATG
Seq C2 exon
GGAGCGGAGACGAGGAAGCGCTCGCCGACTCTCAGCAGCCAGTTCAAGCGGTCCCTGGAGCTGTTGATGAGGACTCTCAGCGTCTGCCAGCCATTTTTTGTCCGCTGCATCAAGCCCAATGAGTACAAGAAGCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'17-23,'17-19,18-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCACGATGTTACACAAGCT
R:
GCTTGATGCAGCGGACAAAAA
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]