MmuEX6012393 @ mm9
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105233894-105240386:-
Coord C1 exon
chr7:105240251-105240386
Coord A exon
chr7:105239532-105239638
Coord C2 exon
chr7:105233894-105234031
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTTTACTGCTACCAGGCT
3' ss Score
5.06
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGCACGGATGCCACCATGCTGCATAAGCTGAACTCACAGCACAAGCTCAATGCCAACTACGTGCCACCCAAGAACAGCCACGAGACCCAGTTTGGAATCAACCACTTTGCGGGTGTTGTCTATTATGAGAGTCAAG
Seq A exon
GCTTCCTGGAGAAGAACCGAGACACCCTGCATGGGGACATCATCCAGCTGGTCCACTCTTCCCGGAACAAGTTCATAAAGCAGATTTTCCAAGCTGACGTTGCCATG
Seq C2 exon
GGTGCCGAGACCAGGAAGCGCTCGCCTACACTCAGCAGCCAGTTCAAGCGGTCTCTGGAGCTGCTGATGCGCACACTGGGCGCCTGCCAGCCCTTCTTTGTGCGTTGTATCAAACCCAATGAGTTCAAGAAGCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'23-22,'23-21,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGCCACCATGCTGCATAA
R:
GATACAACGCACAAAGAAGGGC
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: