DreEX6084397 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22240894-22243952:+
Coord C1 exon
chr21:22240894-22241029
Coord A exon
chr21:22242643-22242749
Coord C2 exon
chr21:22243815-22243952
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCTCTTGTTTCATTGTTCAGGTT
3' ss Score
9.61
5' ss Seq
ATGGTGATG
5' ss Score
1.32
Exon sequences
Seq C1 exon
GGAACAGATGCAACCATGCTGAACAAGCTAAACTCCCAGCACAAACTTAATACCAACTACATCCCGCCTAAGCACAGCCATGAGACTCAGTTCGGCATTCAGCACTTTGCTGGAGTGGTGCACTATGAAACTAAAG
Seq A exon
GTTTCCTGGAGAAGAACCGAGACAGTCTCCACAGTGACATCATCCAACTCGTCCATTCATCCAAAAACAAGTTCATCAAGCAGATCTTCCAAGCTGATGTTGCCATG
Seq C2 exon
GGAATGGAGACGAGGAAACGCTCGCCGACTCTCAGCAGTCAGTTTAAGCGCTCACTGGAACTGCTCATGAGGACGCTGAGCGTCTGTCAGCCTTTCTTTGTGCGCTGCATCAAACCCAACGAGCTCAAAAAGCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'14-15,'14-12,15-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGCTAAACTCCCAGCACA
R:
TGAGCTCGTTGGGTTTGATGC
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]