BtaEX6060082 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57353655-57362601:+
Coord C1 exon
chr15:57353655-57353790
Coord A exon
chr15:57356304-57356410
Coord C2 exon
chr15:57362464-57362601
Length
107 bp
Sequences
Splice sites
3' ss Seq
CACTCTGTGGTGCTGCCCAGGCT
3' ss Score
4.8
5' ss Seq
ATGGTAACA
5' ss Score
4.87
Exon sequences
Seq C1 exon
GGCACGGACACCACCATGTTGCATAAGCTCAACTCCCAGCACAAGCTCAACTCGAACTACATTCCCCCCAAGAACAATTACGAGACCCAGTTTGGGATCAACCACTTTGCAGGCATCGTTTACTATGAGAGTCAAG
Seq A exon
GCTTCCTGGAGAAGAACCGGGACACTCTGCATGGAGACATCATCCAGCTGGTGCACTCCTCCAGGAACAAGTTCATCAAGCAGATCTTCCAGGCCGATGTTGCCATG
Seq C2 exon
GGCGCCGAGACCAGGAAGCGCTCGCCCACACTCAGCAGCCAGTTTAAGCGGTCGCTGGAGCTGCTGATGCGGACACTGGGTGCCTGCCAGCCCTTCTTCGTGCGCTGCATCAAGCCCAATGAGTTCAAGAAGCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACACCACCATGTTGCATA
R:
ACTCATTGGGCTTGATGCAGC
Band lengths:
256-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]