RnoINT0097459 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24792508-24793995:-
Coord C1 exon
chr18:24793842-24793995
Coord A exon
chr18:24792585-24793841
Coord C2 exon
chr18:24792508-24792584
Length
1257 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATG
5' ss Score
5.68
3' ss Seq
ACTACTGCTTCTCTCCCAAGCTG
3' ss Score
6.98
Exon sequences
Seq C1 exon
GGAAACTGCACCTCCTATGAGGGGCTCAGTGATGCCAAGGACTACGCACACGTTCGCTCGGCCATGAAGATCCTCCAGTTCTCGGACTCGGAGAACTGGGACATCAGCAAGCTGCTGGCAGCCATCCTCCACCTGGGGAATGTGGGGTTTATGG
Seq A exon
GTAATGTTTTTGTCTTGGTAACACCCCTAGGGAGGAAGAGTAGAGGGACAGGGACAGCAGGAGAAAGAAGTCCCTGGGTCCTTTCGCCAAAAGGATCAGGTGTCCAACCCAGTTTTGGAAAAATATGTCCTAAAAATATGGCTATGATTTTGCAGTTTGTAACTCCAGTGATAGTGGAAGGGTGTCAACCATGACAGGTAGGCCCTAGAACTCTTAGTGAAAGATACTCAACATCAATGTCTGGCCTTCATATTTACATGCATGCATGTGTAAATTCACCCACACCCACACATTAATACATGTATACTGTGTGTTGCATGTAGACATGCATGTACACTACACACATGTGCATACACATAAACACAAAATATAAGGTTGAGAGTGATCAAGGAAGCCACCTGTTGAATCTGGTCCCACACATGTGCACACATGGGCACACACACACACACACATACACACACACACACCAAGTGCCATATAGGGCCATAAAAGGCAATTAAAAAGATAATGAAAAAGCAAAGAAATGGTTTTTATGAAACCTAGTGTGTGTGTGCGTGCGTGTGTGTGTATGTATGTGTGTGTGTATGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGCTTGGGAGTGAACCCAGATTTTACGCACACTGGGCAAGCGTTCTATGCTCTACTCTTAGTTCTCACAGCTTTTAAAGCTCAGACAAAACACCTGCTGTCTCTGTTAGCCAGCCATTCTTGAGGTGGACAGTGGCTCACAGAGGCAGAACTGCAGGCAGAGACGTAGTCAGGAGGCTGCAGCTTACAGCTGGTGCTCCATTGATATAGCCTCTGCCCACATAAATACACAAGTGTCTGTGCTACTGAAGACAGCAGAGTGAAACAAAGCAAGCTGGCAATCTCTCTTCTCTCACAACAGACCCCAGTCAGGCTCACAAGGGCCAGTATCTGCTCAGTATCTAAACTCAGTCTGAGTTTAGGGAGACTCAGGGTCCTGACCTAGCCAGACACGGGAGCAGGCTCTATGTCAATGATTCAGCTAATGATTGATACTGACTGCTGGTCAGTGGGGCGATTCAACTCCCCGGAGAAGGTCCCTGGACAGGTGCTGTAATCACCTGAGCACCGTATTTGCTACGGCGCAGACACAGGGCTGCCAAGAACCCCAACCTTCTTGGGCCCTCTGTCCATCACATCAGCTTCTCTCTCAAGACTACTGCTTCTCTCCCAAG
Seq C2 exon
CTGCCGTCTTTGAGAACCTGGATTCCTCTGATGTGATGGAAACTCCGGCCTTCCCCTTTGCAATGAAGTTGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACTGCACCTCCTATGAG
R:
CTTCATTGCAAAGGGGAAGGC
Band lengths:
222-1479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]