BtaINT0098355 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4880865-4883530:-
Coord C1 exon
chr2:4883377-4883530
Coord A exon
chr2:4880942-4883376
Coord C2 exon
chr2:4880865-4880941
Length
2435 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATG
5' ss Score
5.68
3' ss Seq
TCAATTGCTTCTCTCTGCAGCTG
3' ss Score
10.84
Exon sequences
Seq C1 exon
GGGAACTGTACTTCCTGTGAGGGGCGCAATGATGCCAAGGACTATGCCCACGTCCGCTCGGCCATGAAGATACTCATGTTCTCTGACTCGGAGAACTGGGACCTCAGCAAGCTGCTGGCCACTATTCTCCACCTGGGGAATGTGGAGTTCATGG
Seq A exon
GTAATGCTGCTTCCACCCAAAGTACACCCCCTGGGGAGGAAAAATGGGGATGAGAGGAGGAAGAAATCCCTGTGGGTTCTCATCCAAAGGGCCCATCAAAGTCACAACGTGCTGGCAAAGTGCATTAGGAATTTTAGCTGTAATTTTGGGGGTCTTGTGGAGTTAGGGGGAAGATGCCAAAGCTTAGGGCCCTCCAAAGGTGAGGGTATTGATCAATCATCCCTAACTTTTGGCTGGAAACCCAAAGAGTAAACAACTTGGAGTAAGCAAAGCCATGCATGAACTTGCAAGCTGCAAAGTATAAAAAAGTGACATTACAGATTTTAAAGTGAACCACATCAAAATTCTAAAGTTAAAAATGTTAAAACCAAAATGAACTCTATGGATGAGTTTAACCACCAGTTTTATAATGTGAAAAAGGAGAAAAGGTCAGAAAAAAACTGTGTGTACAGCACAGAAAGACAAAAAAGATGGAAAATATAAAAGAGAAAATAGGAGACCTAGAAGATACAATGAGAAGATAAAGTATACATTTAATTAGAGTTCTAAAGGGAAAGAGAAACTGTGTGTGCAGCATGGAAAGGCAAGAAAGATGGAAAATGGGAACTTGCTTAGTGGCCCAGTGGCTAAGACTCCATGTTACCAATCCAGAGTTTCCAGGTTCGATCCTGGGTCAGAGAACTAGGTCTCACATGGCAACTAGGAGTTCACACGCCACAACTAAAGGACCCAACACAGCCAAATAATAAATAAGTAAATATTTTTTTAAAGATGGAAAATATAAAACACAGAGTAGGAGACCTCAAAGATAGAGTGAGAAGATGTAGAATACATTTAATTAGAGTTCTAAAGGATAAGAGAGGGTTGGGACTTCAACAGCACCTGAAGAGATTATGGCTGGCTCTAGAGCTAATGAAAGACACCAACTCACACAGCAGTGGGGAAAAGACAGACCTTTCAATAAACTCTTCCAGAGCGATTGGGTATTCATGTAGAAAACATGAACCACTATCTCAGATCATATAAGGAAATCTACTCCAGCAAGCTGTTGCTGGGTGACCATGTAATCTATCCACCAAACCGGGCACCTCTGCTGGTAAAAAGGGGTGCTGACAAGCAGGGCGCGTCAGGACGTGGAATACTACCAAATGTGATGTTGAGGAGACGAAACCAGGCAAAAGAATGCAGAGAGCTCACACACAAAATTTAAACACAGATAAAATTAAATGCTACAGGGCTTCGCTGGTGGCTCAGTGGTAAAGAATCTGCCTGCCAAAGCAGGAGACTCAGGTTTGATCCCTGATCTGGGAAGATCCCACATGCTGCGGGGCAACTAAAATACAGCTTTAGAGCCTGTGCCCTAAAGCCCAGGAACCGCAGCAAGAGAAGCCCACACGCTGCAACTAGACAGTGGCCTCCGCTCTCTAGAGAAAAAGCTGGTGCAGCAACCAAGACCCGGCATGGCAAAAAATAGATAAATAAACTTTTTTTTTTTAATGAAATGCTACAAAGGAATGCAGGTAGTTAGATGACACATAAGTAAACGGGTAAAATTAAATGCAGCTTAGTGGTTAAATCAGTGAGGGACAGGGAGGCCTGGGATGCTGTAGTCCGTGGGGTCACAAAGAGTCAGACTCGACTGAGAGACTGAACAACAACAGGGATTAACATATAGGTAGTAAAAAGATAAGGAAAAACCAGGGAAGTGGTTTCTGTGATAGTCAGGAGAATACTGCCTTCGGTGGAGGAACTGGTCTAAGCAGGAAAGGTCGTGGGAGGCCCCGGCTGTTCCTGAAGCTCTGGGTTTGGCTTTAGTGGTTGATTCACAATATTGACATAATAATTATCCTTTATAACATACCTTTGGGTTTTATGCATTTCTTATCCATACGCATTAGTTTACAATCTGTAAGTCTAAAGAAGGAAAAAAAAATGACAGAAACAGCTTTCTTCCGTCCCTGCAGCTCAGCGGCCCTAAAGGGAGGGACTCAAAGGGGAGGGATTGAACCAGGAGGTGGGTCAGGAGACTTGCAGCAGAGCTGGGCCCTGCTTCCTCCTTTGCTGAATGCATGAACACACCTGGGTTTCTAAGGACAGCAGAGTGGATGGAAGGAGACCAATGGGTCTTCCTCTCCCTTGATAGACTCCACCCGCCCCACTGGCACCAGACTTCTCCCTCTGATAGCTCCCCACTCCCCTTTGAGTCAGGATCTCAATCTGGGCAGCGGGGGACATACCCTGTGAACAGCGGTTAGAAGCAAAGTGTTGATTGTCCCCAGAGAGGCCATGGTTCTCAGAGGGGGCCTGGGAGAGGCAGTGCCTGGCACCCAGGGATGGCTGTCTCTGAGCCATGCATCTGGAACAGCCTCCCCGGGGCCTCTGTCCCGTCCCTTCAGGCCACTTTGCCTCTCAGGGTCAATTGCTTCTCTCTGCAG
Seq C2 exon
CTGCGGTCTTTGAGAACCTGGACTCCTCTGATGTGATGGAGACCCCTGCCTTTCCTACTGTGATGAAGTTACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]