GgaINT0031396 @ galGal3
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2275729-2276896:+
Coord C1 exon
chr9:2275729-2275882
Coord A exon
chr9:2275883-2276819
Coord C2 exon
chr9:2276820-2276896
Length
937 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TGACTGTTTTCTCATTCCAGCGG
3' ss Score
9.43
Exon sequences
Seq C1 exon
GGCAACTGCACGTCCTGTGACAGCCGGAACGATGCAAAGGAGTATGCCCACATCCGCTCAGCAATGAAGATCCTTATGTTCTCAGACTCTGAGCACTGGGACATCAGCAAACTGCTGGCTGCTATCCTGCATCTGGGGAATGTGGAGTTTGAAG
Seq A exon
GTAAACTCAGCATTGCCTCTGCTTGGTCTCTCCTCAGACTTGATGTTAAAGGCCTAGAGGTACTTCTGCTTCCATCTGTAAGGATTAGGCTGTGCTTCTCTGCCCAGTATAAATGGCTAGGAGAACAGAGTTGGTGGGGCAGGCAGATAAGCAACATTACACACTGGGTAATGTTTTGAAAAACACCCATCTTATTATTTTGTCACACTGGGGTTTCCTTGGTTATAAATAGACCCTTATCACACAAACTGAATCACCAGATAATATAATGCCATGCTGCATTTGCTGACTGTAGTGCTATGTAAGTCAGAGGACAGAGGAGCAACTGAGTCATGCTATCTGTGGAGATGATAGCTGTCATTCTCTTGGCTGGGTACTGTGAACATTCAGCTGCGTAAATGCAGCTCTGATATGGCACAGTCTGATAACGCCCATCAGTAGGACAGCAGGAGCACTCATATTTTAGAAAAGGACTCTTCTCTGTGTGATGCAGTGATGCCAGGTGGGTTTTTTGGGTTAATGCTGGCTGCTAAAACAAGGCTTCTCCTATATGAAGGAAGGTTGTTATCTAGGCAACCTTTTTTGTCTACATTTCTCACAAGCTAGATACAAGGCAAGAAATGTTTTCAGAAAAAAATTCTTAAGTCAGATAAAACTTCTCCAGATCCCCAATAGCTGCAGTTTATAACTAATAACTCTGTCAGTTTTGCTGCTATTTCTAGTGTGATGTTCTAGAGTTGTGAGGACCTCATACATGCCAGGACTCCTAGGTAAAATTAGAACCTTCCTTAGTAAAATCTTCAGACCCAGGAGCTCCATCAGGCAAATTACTGCTTTGCCACATTCCTGGAGGTACAGGCTTACAGAAGTAAGGCTGCACAGCTTCCAACCACAGCAGAAATGATTCACCATGAGAATGACTGTTTTCTCATTCCAG
Seq C2 exon
CGGCTGTGTATGACAACTTGGACTGCTCTGATGTGATGGATTCACCACACTTTTCAATTGCAACCAAACTGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACTGCACGTCCTGT
R:
CAAGCAGTTTGGTTGCAATTGA
Band lengths:
229-1166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]