RnoEX6058330 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24793842-24797349:-
Coord C1 exon
chr18:24797207-24797349
Coord A exon
chr18:24795709-24795822
Coord C2 exon
chr18:24793842-24793995
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCACGTGTCTTTTCTCCCAGGCT
3' ss Score
9.11
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
CCTTTGGCAATGCCAAGACCATCCGCAATGACAACTCCAGCCGCTTTGGGAAGTACATCGACATCCACTTCAACTCTAGCGGGGTGATCGAGGGGGCAAGCATTGAGCACTTCCTACTGGAAAAGTCGAGGGTCTGCCGGCAG
Seq A exon
GCTGCGGAGGAACGGAACTACCATATTTTCTACTGCATGCTGATGGGGATGAGCCTGGAAGAGAAGAACATGCTGGGTCTGGGCATGCCCTCTGAGTACCACTACCTGACCATG
Seq C2 exon
GGAAACTGCACCTCCTATGAGGGGCTCAGTGATGCCAAGGACTACGCACACGTTCGCTCGGCCATGAAGATCCTCCAGTTCTCGGACTCGGAGAACTGGGACATCAGCAAGCTGCTGGCAGCCATCCTCCACCTGGGGAATGTGGGGTTTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'7-18,'7-7,12-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
PF0006316=Myosin_head=FE(5.4=100)
C2:
PF0006316=Myosin_head=FE(7.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTGGCGCTGGGAAGA
R:
CCCGACGATGGAAGGAAACAC
Band lengths:
219-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]