GgaEX6045490 @ galGal4
Exon Skipping
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:840922-841885:+
Coord C1 exon
chr9:840922-841064
Coord A exon
chr9:841151-841264
Coord C2 exon
chr9:841732-841885
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATCGGCCTCTTTCTTTCTAGGCT
3' ss Score
10.53
5' ss Seq
ATGGTAACT
5' ss Score
6.06
Exon sequences
Seq C1 exon
CTTTTGGAAATGCCAAGACAATTCGAAATGACAATTCAAGCCGCTTTGGTAAATACATTGATATCTACTTCAACCACAGTGGTGTGATAGAAGGAGCCCGGATAGAACAGTTTCTTCTGGAAAAGTCCCGAGTTTGCCGGCAG
Seq A exon
GCTCCAGAGGAGAGGAACTATCACATCTTCTATTGTATGCTGATGGGGATGAATCTAGAGCAGAAAAAGATGCTGAATCTGGGCACTGCCTCAGAGTACTCTTATCTCACTATG
Seq C2 exon
GGCAACTGCACGTCCTGTGACAGCCGGAACGATGCAAAGGAGTATGCCCACATCCGCTCAGCAATGAAGATCCTTATGTTCTCAGACTCTGAGCACTGGGACATCAGCAAACTGCTGGCTGCTATCCTGCATCTGGGGAATGTGGAGTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
PF0006316=Myosin_head=FE(5.5=100)
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATTCAAGCCGCTTTGGT
R:
CACATTCCCCAGATGCAGGAT
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]