MmuEX6000725 @ mm10
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:32003491-32007143:-
Coord C1 exon
chr18:32007001-32007143
Coord A exon
chr18:32005431-32005544
Coord C2 exon
chr18:32003491-32003644
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTGGATGCTTTTTCTCCCAGGCT
3' ss Score
6.75
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
CCTTTGGCAATGCCAAGACCATCCGCAATGACAACTCCAGCCGCTTCGGGAAGTACATTGACATCCACTTCAATTCTAGTGGGGTGATTGAGGGCGCAAGCATTGAACACTTCCTCCTGGAGAAGTCCAGAGTCTGCCGGCAG
Seq A exon
GCTCCAGAGGAACGCAACTACCACATCTTCTACTGCATGCTGATGGGGATGAGCCCGGAAGAGAAGCAAATGCTGAGTCTGGGCATGCCCTCTGAGTACCATTACCTGACCATG
Seq C2 exon
GGGAGCTGCACATCCTCCGAGGGGCTCAGCGATGCCAAGGACTACGCACACGTCCGCTCGGCCATGAAGATCCTCCAGTTCTCAGACTCAGAGAACTGGGACATCAGCAAGCTGCTGGCAGCCATCCTCCACCTGGGGAATGTGGGGTTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'9-12,'9-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.131 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(25.4=100)
A:
PF0006316=Myosin_head=FE(5.4=100)
C2:
PF0006316=Myosin_head=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCAAGACCATCCGCAAT
R:
CAGCTTGCTGATGTCCCAGTT
Band lengths:
249-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types