RnoEX6058333 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24789943-24791599:-
Coord C1 exon
chr18:24791480-24791599
Coord A exon
chr18:24791160-24791302
Coord C2 exon
chr18:24789943-24790153
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCCGTGTCTCTCCAGGGC
3' ss Score
11.51
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTACAGCACCAGGCTCTCCGAGACTGTTTGATCAAACACACAATCCCTATCCTTGGAGAGTTTGTCTCCAGGCCCTTGAACATCGCGCAGGCTGCAGACCGGAGAGATGCCTTTGTCAAG
Seq A exon
GGCATCTACGGGCACCTCTTCCTGTGGATCGTCAAGAAGATCAATGCTGCGATCTTCACTCCCCAAGCCCAGGATCCCCAAAATGTGCGGAGGGCCATCGGTCTCCTGGACATATTTGGCTTTGAAAACTTTCAAAACAACAG
Seq C2 exon
CTTCGAGCAACTCTGCATCAATTTCGCCAACGAGCACCTTCAGCAATTCTTCGTGAAGCACGTGTTCACCATGGAGCAGGAGGAGTACCTGTCTGAGAACATCACTTGGAACTACATCCACTACACGGACAACCAGCCCATCCTAGACATGCTGGCCCTCAAGCCCATGAGCATCATCTCTCTCCTGGATGAGGAGAGCCGCTTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'7-22,'7-11,16-22=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
PF0006316=Myosin_head=FE(6.9=100)
C2:
PF0006316=Myosin_head=FE(10.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAGTCTGGCGCTGG
R:
CTCCTTCTGCATCCTGTCAGC
Band lengths:
218-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]