GgaEX6045486 @ galGal3
Exon Skipping
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2277213-2279379:+
Coord C1 exon
chr9:2277213-2277332
Coord A exon
chr9:2277552-2277694
Coord C2 exon
chr9:2279169-2279379
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCACTTTAATTTCTCCCCAGGGT
3' ss Score
9.8
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGACTATAGTGAACTTCAAAACAGCCTCACAAACCTGTCCATCATTGTCCGAGGAGAAAGCGTGTCCAGACCCCTGAATGTGGCTCAAGCTGCAGATGGGAGGGATGCCTTTGTGAAG
Seq A exon
GGTATATATGGACGGATTTTCCTGTGGATAGTGAACAAGATCAACTCAGCCATTTTTAACCCAACTTCTCAGAAGCCTAAAAATACACGCCAGTCCATTGGGTTGTTGGATATTTTTGGGTTTGAAAACTTTAGCAACAACAG
Seq C2 exon
CTTTGAGCAGCTCTGCATTAACATTGCAAATGAACACCTTCAGCAGTTCTTTGTGCACCATGTCTTCAAGCTGGAGCAAGAGGAATACCTTGCAGAGCACATTACCTGGAATAACATTGACTTCACTGACAACCGCCAGACCCTGGAAGTCATTGCACTCAAGCCCATGAACATCATCTCCCTCATTGATGAGGAGAGCAAGTTCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.8=100)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTCCGAGGAGAAAGCGTG
R:
TGTTCATGGGCTTGAGTGCAA
Band lengths:
248-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]