HsaEX6015452 @ hg19
Exon Skipping
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128339466-128341907:+
Coord C1 exon
chr2:128339466-128339585
Coord A exon
chr2:128339879-128340021
Coord C2 exon
chr2:128341697-128341907
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCACCCCCGTGTCTCTCCAGGGC
3' ss Score
10.9
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTGCAGCACCAGGAGCTCCGGGACTGTCTGATCAAGCACACCATCCTCATCCGAGGGGAATTTGTCACCAGGTCCCTGAACATTGCCCAGGCTGCTGACCGGAGGGACGCCTTTGTCAAG
Seq A exon
GGCATCTATGGGCACCTCTTCCTGTGGATTGTCAAGAAGATCAATGCCGCCATCTTCACACCACCAGCCCAGGACCCCAAAAATGTGCGGAGGGCCATCGGCCTCCTGGACATATTTGGCTTTGAAAATTTCGAGAACAATAG
Seq C2 exon
CTTCGAGCAGCTCTGCATCAACTTCGCCAACGAGCACCTGCAGCAGTTCTTTGTGCAGCACGTGTTCACCATGGAGCAAGAGGAGTACCGCTCGGAGAACATCTCCTGGGACTATATCCACTACACCGACAATCGGCCCACCCTGGACCTGCTGGCCCTCAAGCCCATGAGCATCATCTCCCTCCTGGACGAAGAAAGCCGCTTCCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
PF0006316=Myosin_head=FE(6.9=100)
C2:
PF0006316=Myosin_head=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACCAGGTCCCTGAACAT
R:
CCAGGAGGGAGATGATGCTCA
Band lengths:
246-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)