RnoEX6058332 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24791160-24792584:-
Coord C1 exon
chr18:24792508-24792584
Coord A exon
chr18:24791480-24791599
Coord C2 exon
chr18:24791160-24791302
Length
120 bp
Sequences
Splice sites
3' ss Seq
CAGGCCCACTCTCTCCCCAGGTA
3' ss Score
10.74
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
CTGCCGTCTTTGAGAACCTGGATTCCTCTGATGTGATGGAAACTCCGGCCTTCCCCTTTGCAATGAAGTTGCTAGAG
Seq A exon
GTACAGCACCAGGCTCTCCGAGACTGTTTGATCAAACACACAATCCCTATCCTTGGAGAGTTTGTCTCCAGGCCCTTGAACATCGCGCAGGCTGCAGACCGGAGAGATGCCTTTGTCAAG
Seq C2 exon
GGCATCTACGGGCACCTCTTCCTGTGGATCGTCAAGAAGATCAATGCTGCGATCTTCACTCCCCAAGCCCAGGATCCCCAAAATGTGCGGAGGGCCATCGGTCTCCTGGACATATTTGGCTTTGAAAACTTTCAAAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'7-18,'7-10,15-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTGGCGCTGGGAAGA
R:
CCCGACGATGGAAGGAAACAC
Band lengths:
219-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]