GgaEX6045487 @ galGal3
Exon Skipping
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2276820-2277694:+
Coord C1 exon
chr9:2276820-2276896
Coord A exon
chr9:2277213-2277332
Coord C2 exon
chr9:2277552-2277694
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGCCATGACTGTTCTTCCAGGTG
3' ss Score
8.99
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
CGGCTGTGTATGACAACTTGGACTGCTCTGATGTGATGGATTCACCACACTTTTCAATTGCAACCAAACTGCTTGAG
Seq A exon
GTGGACTATAGTGAACTTCAAAACAGCCTCACAAACCTGTCCATCATTGTCCGAGGAGAAAGCGTGTCCAGACCCCTGAATGTGGCTCAAGCTGCAGATGGGAGGGATGCCTTTGTGAAG
Seq C2 exon
GGTATATATGGACGGATTTTCCTGTGGATAGTGAACAAGATCAACTCAGCCATTTTTAACCCAACTTCTCAGAAGCCTAAAAATACACGCCAGTCCATTGGGTTGTTGGATATTTTTGGGTTTGAAAACTTTAGCAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(5.8=100)
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGTGTATGACAACTTGGA
R:
TGTTGTTGCTAAAGTTTTCAAACCCA
Band lengths:
219-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]