DreEX6022066 @ danRer10
Exon Skipping
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28075521-28076687:+
Coord C1 exon
chr6:28075521-28075597
Coord A exon
chr6:28076313-28076432
Coord C2 exon
chr6:28076545-28076687
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTGATCTTGATCTAATGCAGGTG
3' ss Score
8.26
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AAACCATCATGAACAACCTTGAGGGCTGCGATATTCTATCTTCTACGCATTTCAAAATGGCTACACAGTTATTAGAG
Seq A exon
GTGGCCCCAAATGCCCTGGATGCAAGCTTGACACAGCGCTCTCTGATGACCAACAGAGAGAGTGTAACTAAACCTCTGACCTCAGCACAAGCATTGGATGGCAGGGACGCCTTTGTGAAG
Seq C2 exon
GCCATCTACGGAAGGCTGTTTGTGTGGATTGTGACCAAAATCAACAGTGCCATTTACAAACCGCCTTCTGATGACCCCAAACATGTCAGACATTCCATCGGCCTGTTGGACATTTTTGGCTTTGAAAATTTTAAAAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCATGAACAACCTTGAGGG
R:
TTTCAAAGCCAAAAATGTCCAACA
Band lengths:
202-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]