BtaEX6008369 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4878873-4880941:-
Coord C1 exon
chr2:4880865-4880941
Coord A exon
chr2:4879307-4879426
Coord C2 exon
chr2:4878873-4879015
Length
120 bp
Sequences
Splice sites
3' ss Seq
AGCCCCTACCTACCTTCCAGGTG
3' ss Score
8.94
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
CTGCGGTCTTTGAGAACCTGGACTCCTCTGATGTGATGGAGACCCCTGCCTTTCCTACTGTGATGAAGTTACTGGAG
Seq A exon
GTGAAGGACCAGGCCCTCCGAGACTGTCTTATCAAGCACTCCATCATCATCCGCGGGGAGTTTGTCACCAGGCCCCTGAACATCACTCAGGCTGCAGACCGGAGGGACGCCTTTGTCAAG
Seq C2 exon
GGCATCTATGGGCATCTCTTCCTGTGGATTGTCAAGAAGATCAATGCTGCAATCTTCACCCCACCTGCCCAGGACCCCAAAAATGTGCAAAGGACAATCGGCCTCCTGGACATATTTGGTTTTGAAAACTTCCAGAAAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.8=100)
A:
PF0006316=Myosin_head=FE(5.9=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGTCTTTGAGAACCTGG
R:
ATTTTTCTGGAAGTTTTCAAAACCAA
Band lengths:
218-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]