MmuEX6000728 @ mm10
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:31999952-32001419:-
Coord C1 exon
chr18:32001343-32001419
Coord A exon
chr18:32000271-32000390
Coord C2 exon
chr18:31999952-32000094
Length
120 bp
Sequences
Splice sites
3' ss Seq
ACAGATGCACTCTCTTCCAGGTG
3' ss Score
9.12
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
CTGCAGTCTTTGAGAACCTGGATTCGTCTGATGTGATGGAAACTCCAGCCTTCCCCTTGGCAATGAAGTTGCTAGAG
Seq A exon
GTGCAGCACCAGGCTCTCCGAGACTGTTTGATCAAACACACAATCCCTGTCCTTGGAGAGTTTGTCTCCAGGCCTGTGAACATCGCCCAGGCTACAGACCGGAGGGATGCCTTTGTCAAG
Seq C2 exon
GGCATCTATGGGCGCCTCTTCCAGTGGATTGTCAAGAAAATCAATGCTGCGATCTTCACTCCCCAAGCCCAGGATCCCCAAAATGTGCGGAGGGCCATCGGTCTCCTGGACATATTTGGCTTTGAAAACTTCCAGAACAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGTCTTTGAGAACCTGGA
R:
ATTGTTCTGGAAGTTTTCAAAGCCA
Band lengths:
218-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types