HsaEX6015453 @ hg19
Exon Skipping
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128338321-128340021:+
Coord C1 exon
chr2:128338321-128338397
Coord A exon
chr2:128339466-128339585
Coord C2 exon
chr2:128339879-128340021
Length
120 bp
Sequences
Splice sites
3' ss Seq
GCCCCCACCTGCCTCCCCAGGTG
3' ss Score
9.84
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
CTTCGGTCTTCGAGAACCTGGACGCCTCAGACGTGATGGAGACGCCCGCCTTTCCCACCGTGATGAAGTTACTGGAG
Seq A exon
GTGCAGCACCAGGAGCTCCGGGACTGTCTGATCAAGCACACCATCCTCATCCGAGGGGAATTTGTCACCAGGTCCCTGAACATTGCCCAGGCTGCTGACCGGAGGGACGCCTTTGTCAAG
Seq C2 exon
GGCATCTATGGGCACCTCTTCCTGTGGATTGTCAAGAAGATCAATGCCGCCATCTTCACACCACCAGCCCAGGACCCCAAAAATGTGCGGAGGGCCATCGGCCTCCTGGACATATTTGGCTTTGAAAATTTCGAGAACAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTCTTCGAGAACCTGGAC
R:
CTATTGTTCTCGAAATTTTCAAAGCC
Band lengths:
218-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)