RnoEX0059003 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37674630-37677220:-
Coord C1 exon
chr3:37677128-37677220
Coord A exon
chr3:37675166-37675258
Coord C2 exon
chr3:37674630-37674722
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTCTTCTAATTATTCTGCAGGTT
3' ss Score
9.74
5' ss Seq
TCGGTATTT
5' ss Score
4.52
Exon sequences
Seq C1 exon
GTCAAGTATAAAGAAGCAATTGGACAAGGAACTCCCATCCCTGACCTGCCCGAAGTGAAGCGCGTCAAGGAGACCCAGAAGCACATTAGCTCG
Seq A exon
GTTATGTACAAAGAAAACCTGGGAACAGGCATCCCAACCACTGTCACCCCAGAGATTGAGAGAGTCAAACGCAATCAAGAGAACTTTAGCTCG
Seq C2 exon
GTTTTGTACAAAGAAAGTTTGGGAAAAGGAACCCCTACAGCTGTCACTCCAGAGATGGAGAGAGTCAAGCGCAATCAAGAGAACTTTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'151-163,'151-162,152-163
Average complexity
C3
Mappability confidence:
100%=100=25%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.774 A=0.774 C2=1.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(30.8=25.8),PF0088013=Nebulin=PU(64.0=51.6)
A:
PF0088013=Nebulin=PD(28.0=22.6),PF0088013=Nebulin=PU(57.1=51.6)
C2:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(57.1=51.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATTGGACAAGGAACTCCCA
R:
AGCTAAAGTTCTCTTGATTGCGCT
Band lengths:
169-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]