RnoEX0059811 @ rn6
Exon Skipping
Gene
ENSRNOG00000000341 | Nid2
Description
nidogen 2 [Source:RGD Symbol;Acc:1311685]
Coordinates
chr15:4935964-4940753:-
Coord C1 exon
chr15:4940521-4940753
Coord A exon
chr15:4940137-4940311
Coord C2 exon
chr15:4935964-4936064
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTTCCTGCACTGTCAGTCAGGCA
3' ss Score
0.55
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
CTGAACACTTTCCAGGCCGTTCTGGCATCCGATGAGTCTGATACCTACGCCCTCTTTCTCTATCCTGCCAATGGTCTTCAGTTCTTTGGAACTCGCCCCAAAGAGTCCTACAATGTCCAGCTGCAGCTTCCTGCCAGGGTGGGCTTCTGCCGAGGGGAAGCAGACGACCTGAAGAGAGAAGCGCTGTATTTCAGCCTGACTAACACTGAGCAGTCGGTGAAGAATCTCTACCA
Seq A exon
GCATAGAAACCAGAACCAGCAGCAATCATATGTTTTTGCAGAACCACTGGGGCTTGCTATGAAAAACATTGTTCTTGGAGCTACATAAAAATATCCAGTAATAACTGCCTTGATGGAGGCTTTTCAGGTTAATGATTTCTGGAGAGGAGGCATCATGATTCAGTCTTTCAAACAG
Seq C2 exon
CTTTGAAGCTGTCCACTTCCAAACTCAAGAGGTTTCCCAGCTGCAATACCCCTGCTGTGGGATGGGCTGGGACTCCAGGTTCTCTTCTTACTGATTGGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000341-'9-8,'9-7,10-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.034 C2=NA
Domain overlap (PFAM):
C1:
PF061199=NIDO=PU(81.1=98.7)
A:
PF061199=NIDO=PD(15.2=46.7)
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000082196fB9639
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACTTTCCAGGCCGTTCTG
R:
TGAGTTTGGAAGTGGACAGCT
Band lengths:
257-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]