RnoINT0101078 @ rn6
Intron Retention
Gene
ENSRNOG00000000341 | Nid2
Description
nidogen 2 [Source:RGD Symbol;Acc:1311685]
Coordinates
chr15:4933134-4940753:-
Coord C1 exon
chr15:4940521-4940753
Coord A exon
chr15:4933841-4940520
Coord C2 exon
chr15:4933134-4933840
Length
6680 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
GCTCTTTCCTCTGTTCTTAGACT
3' ss Score
9.16
Exon sequences
Seq C1 exon
CTGAACACTTTCCAGGCCGTTCTGGCATCCGATGAGTCTGATACCTACGCCCTCTTTCTCTATCCTGCCAATGGTCTTCAGTTCTTTGGAACTCGCCCCAAAGAGTCCTACAATGTCCAGCTGCAGCTTCCTGCCAGGGTGGGCTTCTGCCGAGGGGAAGCAGACGACCTGAAGAGAGAAGCGCTGTATTTCAGCCTGACTAACACTGAGCAGTCGGTGAAGAATCTCTACCA
Seq A exon
GTGAGTAATGTGGGGTCTGTGCCCGTGCTATGCACTGGAAGGACATTTAGGAGGGACACTATCTCTAGTGACCAGAAACCATTTGATAATAACCTTTGGTGGCTTCTAAGAAAGGTGCTGGCTCAAAACCAGGAGCTAAGCTGGACCCCTGGAGCTTCAGGCTATCCAAGATGTAAAAGATCCTTTCTTTTTCCTGCACTGTCAGTCAGGCATAGAAACCAGAACCAGCAGCAATCATATGTTTTTGCAGAACCACTGGGGCTTGCTATGAAAAACATTGTTCTTGGAGCTACATAAAAATATCCAGTAATAACTGCCTTGATGGAGGCTTTTCAGGTTAATGATTTCTGGAGAGGAGGCATCATGATTCAGTCTTTCAAACAGGTATTGTTAAGGATTAAATTATGAGTAATATAATTGGGGGGGGTGGATGAGGCTTTTAGACGTCTCAGGATTCTCCTGGCATCATCACCTGAAATCATGCTGATTGGTTTGCCCACAGTGTTGCCAGAGACAAATCCATTTCTTAGTCTCCCCAGAGGGGTTATTCTGCTCGTGCTGGGATAGGCTATTCTGCAGGTGTCTGTCCAGTTGGTGCTCCTGTGAGACCTATTGGCTTCAGGTGGGCTCTTTTGTCTTCATATTCTGTAATACGGGCTTAGCCCACAGTAGTTACTTTGTGGCCTCTCATAGTTGCTTCTCAGTCACACTGAATCCAGCTTGGTTACAGAAACACACTTTACATGCACCTGTTGTGCTTGTCAACTAGATCCCGGCCAGATAGAGTGACTGAGCAAAAATTTGTTGATCACTTTATTTGCAGAGCATTGTGATAAAACACTTGCAGATATTATCTTAATTAAAACTCACTCAACTTAAAGGCAATAAGTATAACTATCTTCCCAGTTTTACAAATAGTCTTACAGAAATTGCGGAAGGTGCTTATGTCAGACTTCAATGGCCGAGCCATAGTCAGTACAACTCTGAAGTACAGATACAGGGGTGATCTCTTATGCAGAGTAGATAAGGTGTTTCTTACTCAAAATTCATGTTACTTGGTTGTTCATATTTTGTTTCATTTTATCAGTCACTCTGGTCACAGCTCCCTCTGCCCCTCTCCAGCAATTCTGATATTTCTGGAAAGCATCAAAGGAGAGACAGTGAAGAACCTGAGTGGGTGGTTGAGAGAGTGGTGTGTGTGTGTGTGTGTGATGTGTTGTAGTGGTTGTGTGTGACACGCGCGCGCGCGCGCGCACCCGCGGGTGCATTCATGTATGTCAACACATGTGATGAAATTGCCTTTATGTCCTAGTAGGGAAACAACAAATTTTCTCCCCTGATATGTATTTTGCACCGAAACATCGGCAACACACAACCATGGGCAACACACACGCAGCACACACAACTTTTACACGCTATGCAGGTACCATTCTCTTTAACAATATCTGTGATTCTTGGTCCTTCTATCCCAGATGGTTGGTGTCTAGGTCCTGTTGCCTTTTAAACTTCATTCAGTATTTTCAAGCACTCAGCCCCTACTTTCAAGGGGCTCGTACATACAAGGTCCTATCCTGGTTCTGTTGATTCCNNNNNNNNNNNNNNNNNNNNNNNNNAATGTGTTGCAACCCGTAAGACAAGTGATACTGACAGAATCTGCAGGAAAGGAAGCTAGGAGAAAGTGTTTATATTATGAACACTCGAAGGACAGGCAAAGCGCACACCGAAAGGGAGGTAGCATATTGCACTGCAGAGTCACGGGTAACCGGCTAAATCGACTGCATTTATGGTATTCCATTTGTCGTAGTTTGTCTCATTGTATTAAAGGCGATAGACACACCAAGATCGTGTCAATCACGTCTGGTCATGGTCTCCATGCTGCTTCGGACGACAACAGAAAAAAGCAACCAAATTTTGGCAACGCACGGCTGTGCAAAAATCGCAGTATTTCAGACACTCAGCCCTCCTTCCCAAGGCTGCGAGTGCAACCTAGAGAAAGAGAACTTTAAGCTGACAGGAAGATGGTTCCTAAAGAGAAAGCTCGAAGTGCCATAGCGTAACCCCCCCGGTTCAGAGCCGTAGACTATAGCCAACAGGTGAGATGGAGACCAACACCGGGGTATGGATCCACAGAACCAGGATAAGGACCCTTGTATGTAGGAGCCCTTGAAAGTAGGGGCGGAGTGCTTGAAATACTTAATGAGTTTAAAAGGCACAGCACTAGACCAGCCCAACAGCATCTGGAAGAACGCGACCAAAACACAGAGTAGTATTAGCAATGAGAATCGTACCTGCCACAGCTGTAACGAAGTGTGTGGGGTGCCGTGGTTGCCCAATGCGTTGTGTGTTGCCGTGTTTCGCTGTGCAAAAGAATACATCAGGGGAGAAATGTGTTGTCTTCCCTACTAGGCACATCAAAGAGCATTCATCACAGTGTGTTGACATACATGAATGCACGGCTGCGTGCCGCGGCGGCACGCGGCGGCGTAAATCACACACACACCACACAACACCACACACACACACACACACACCACTCTCAATAGGCCAACGGGCTTACTGGTGTGGCCTTCATAGTTGGTTCTCAGTCCACTGAGGTCGCAGCTTGGTTTAGCCGAAACACACTGTCTACATGGACACCGTGGTTGGTGCTGTTGTCGAAACTAGATTCCCGGCCAGCATACGTGCACTGGCAAAATTGTGTTGCAAGTCCTTTATTTGGGCAGAGCCACTTGTGATAAAACATTGCAGCCCTATTTTTATTAGCCAAACTCACTCAACCTTGACGGCATAAGTATACGTATCTTGCCAGGCTTTTCAAATGTTCTTACCACCCCAACCTCTGCCGGACAACGGTCGCGCCTTATGTCAGACGTCGAACATGGGCCGGGCATTGAGTCAGTACAACTCTGGAAGTCAGAGACAGGCGCGGTGATTCGTCTTATGGAGGAGTAGTACGGTGTTTCTTACTCAAAACTCGGCGTCCTGTTACTTGTGAGTTGGTGCATATTTTGTTTATTTGTATCAGTCAGTTCGCGTCCACGAGCTCCCGTCTGCGCCCCTCTCAGCGACTTCTGGATGATTTCTGGAAAGGATAAAACCAGCGGAGCAGTGAAGAACCTGAGTGGGTGGATGAGAGTGTGTGTTGTGTGTTTGTGTGTGTGGTGTGTGTGTGTGTGGGGTGTGTACACGCGCCCGCGCGCGCGCGCACGGGCGCGTGCATTCATGTATGCAACACATGTGTATGAATGCCGTTTTAGGGTGTCCGCTGAGTTAGGGAAACACAAATTTCTCCTGATATGCTTTTTGCACACAAACACAGGCACACACACACACATGGGCACACACACGCACACACACAACTTCTTACAGCTATGCAGGTACCAATTCTCATTCTAATACTCTGTGATTCTTGGTCCTTCTTCCCAGATGCTGTTGGTGTCTAGGGTCTGTGCCTTTTAAAACTCATAGTATTTCAAGCACTCAGCCCTACTTTCAAGGGCTCTACATACAAGTGTCCTATCCTGTTCTGTGATCCATACCCGGTGTTGGTCTCCATCTCACCTGTTGTATAGTCTAGACTCTAGAACAGACTTAGCTATTGGCCTTCTATCCTTTCTCCTCTTACCTCTTCCCCTGTAGCTTAAAGACTCTCTTTCTCTAGGTTGCACCTAGAGCCCCTTGGAAGGAGGGCTGAGTGCTTGAAATACTACGATTTTTAAGACACAGGTGCGTGCCAAAAAGGAGCAGCATGAGACATGACCAGAGTGATTGACAGATTTGGTGTGTCTCACGCTTAATAAAATGAGACAAACTACAGACAATGGAATAACATAAAATGCAAGTCAGAATTATCCTACCACTACTCTGAGTGACAACTATGCTACCTCCCCTTTCAGCGTGGGCTTTGCCTCCCATTCAGTGTTTCCATACTTAACACTGTCTCCTAGGCTTCTTTCCTCCAGATTCTGTCAGTATCATTGTCTTAAGGGTTGAAACATTGCATCATACATGCCCAGCATTGAGGACAACATTTATGAACTAAAGTACCTCAGGATCATGGTCCTAGCTCCCTCTGGATGCTTTGCTGTACCCCTCCAAGGAGAAGAACATTTTCCTAGTCCTGGAATCTCTTCCTCCAACAGAGGTCATACATTACTCATGTTTGCAGGCCTCTTCTGAAACATATGCATATTCAGGTAGAGAAGAGAGTAGTTCCTGGGAAGGGATTACCCACAGGCAGGCCAGCATGACTGTCCTGTTTTGTGATACAGTTTTTCTTTCTAGGAGACAAATTCTATCCGTGAGCATTCCAAACGACCTCAGAGTGGAGGGTAAATTAACTGCTTAGATTCCCACCAGGCACTGTGGCAAACGCCAGGATATTGATTTATATCTCATTAGAAGGCATTTATTTAGCTCCACTCTTGCATGATTTGTATTTTCCTACTCTTTGAAGCTTTGAAGCTGTCCACTTCCAAACTCAAGAGGTTTCCCAGCTGCAATACCCCTGCTGTGGGATGGGCTGGGACTCCAGGTTCTCTTCTTACTGATTGGTTTCAGTTTTTAAAATTACGTTACTGTGTGGGAGTTGGGGGTTGGAGGCAGCTGGTGGGGAGGTGTCTGGGTCGGAATCCAGTTTGTCAGAGTTTGTGCTCTCCCCCTACCACGTGGATTCTGGGTATAGCTCTAAGCTCTTGTAGGTAAGTGGCTTTCCCTGCTAAGTCATTTTTTCAGCCTGGAGTTTTGTCTTCTGTGGTGTGTTTTATTTGCAACCCTAATTTCTGTAAGCACCAACTGAGGGCAAGAGTTGAAGCTCTGCTGGTAGAACATTGCCTTGCGGACACAAAGCCCAGAGTTTTGACCTTGGTGCCACACAAACAGGGTTTAGTATCACACCTGGTATCCCAGTGTTTGGGAGGTGCAGGCAGGAGGAATAGAAGCTCAAGGTTATCATCAGCTACATGAGACTGTGTCTCAAAAAAATGAAAAGAAACCTTAGCAATTGAATATAGCAAATCGCAGAAGGGACGAACACTGACCTGATTGGGGAGGAGAGGGTTTATTTGGTTTACTGTCCTGGGTCACACAGTGCATTAGGGGAGCCAAGGCAGGAACTAAGGCAAGACGGGAACCTGGAAGGAGGCAGGAACTGGAACAGAAGCCATGGAGGAACATTATTATTGGCTTGGTTCCTCTGTCTTACTCAGCCTGATTTCTTACACAACCAGAGATGGTACCCTAGGGTGATATCACCCATAGTGAACTGCTCTTCCTCCCCCCAATCATTAAGCAAGAAAACGCCCCTCCCCCAGACTTGCCTTCAGGCCTGTGTGATTGAGGCAATCTCTTCTCAGGTCTGCATCAGGGTGACAAAATCCAGCCAGTACAGCAGAGTATCATGGATACACTTGGGTACAGGTAGTGGCTAGTGGACAGTGCACAGAATGAGAGAGAGAAAGAGAATGAAGAAAACCTCAACTCTCTTCATTATTGCAGTAGAAACCTAGACTAGAATGATGAATATTTGCCCCAGTGAACAAAGATCTCATTATATGATTCAGTGGATCTTAATACCTCTTTTTAGCCATTCCCTCTTATTCTTCGTTGTTGACTTTTGAGGAAATCCCGTAGTGTGGGAGAATTTGAGCGTGGCATTTCGTGCAAACACAGGATCAGTATCATTGGCTAGGTCTAGCTTTCCAGAGCTTCTTAACCCCAGCTTTCTCTTAGGGTTAGGAGTCGTCTTACACATGGTGTCCTCTTCACAGTGTACCATCGACACAGAGATAGTAGGTCACTGAGCTGGCGAGAGTAGTGCCACATCCCAGCAGAAGATCTCGAGTTTCAGGATAGCTGGGACTATCTGGTGAGACTCCTCTGAGAAAAGAGATTCTTGGGAACTAAGAGGGGTTCATGGTCTACAGAGACAATGAAGATCTGTTCCCAGATACTGAGCCTCATTTTGATTATTACATTTGTATCTCACCTGTGTTGAACTTTTGCTCAAAAATTGCTTTAGACTTGGTCATTAAAAAGCACTGATAGATCTATCATCCTCTGTCATTAATACATTAGTCCATGTGAATCACAGTACACAGAGATGTTTGGAAGACAAAGTTTCTTGTTAGCATGAAATTCTTGCCCTGGCTTTGCCAACTTTTGGCTGTTTGATCTGAAGATTAGCTAACTCTAGAAACCAACTTTTTCCTCACTAAGATCTAGCACAGCTACCACCCCTGTCTTGCAGAGCACAGTGAAGACAGATGAGCACTGGTGTAGGCACGGCTTGTAGAAATCAGTACTATTTAAGCATTTTAGGAATTGTAAGCTTAAGTAAGCTTGAGTCCGATTTAAGTTTTCATTCACGTCGAGAAAGCATAAAATATTCTTGCATTCCATGTTTGCTCTCAAGACAGCCAGGTTTCTGACAGAATATTTGATTTGGGCTTCTGGAGCAGACATATAACCTGATGACTTAGTGTTCCACACACAGTGCCAGACAAAAGGCAGCTTATAACAAAGTTCCTGTATGGTATTTATCTCAGTCACTTAGAAGCTTTGCTTCTGTTTGACATAGCAGGGAAAATTCGACTTTGACCATTAGAGTCTTTTGATTTCAAACTAAATTCTGAAGGAGGATGAATGGGCTGGTTATAATCTGCTCTTTCCTCTGTTCTTAG
Seq C2 exon
ACTAAGCAACCTGGGGATTCCTGGAGCGTGGGCCTTTCACATCGGCAGCAGGCTGGCCCTGGACAATGTCCGGCCAGCCACAGTTGGAGGTGACCATTCCACAGCCCGCTCCTCAGCGCTGGAGCACTCCTTCAACCATGCTGCAGCCCTGGAGAGCTATACTGAGGACAGTTTCGATTACTACAATGAGAATGAAGAGGATGTAGAATACCCACCCATTGAACCAGGGGAGGCCCTGGAAGGCCACAGCAGAATCGATGTGTCTTTCAATTCAGAGGTTAATCCCACGTCTCCAGATTCTGATCACGCTTCTCCTTTGCCACACCCAGCACCTGGTAACTGGCCATCCTACCGGGAAACAGAATCGGCTTCTTTGGACCCTCAAACCAAACAGGGGCCACCTGTGGGAGAGGTAGAGGTCCTGGATTTCAAGGACCCAGCAGAACTTTTGGATCAGACGGGCACCAGAACCCCAGCTCCTCCAGGGGCAGATGCAGCTTTCCTAACTCCAGGCAGGGAAGACCTTGGGAACAGAGACACCCAGTCCTATCCAGAGGCACGGCCAGTGCCTTCAGAGCCAGATGTTCCTGTCGCTCCTCTGGAAAGAGAAATCCTTCCTAATTACCCCGAGTCTGGTCACGTGCCACCCCTGAGTGGAGGGAGGTATGTGGTAGGACTGGAGGACCACGTGAGTTCTAAAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000341:ENSRNOT00000000383:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.806
Domain overlap (PFAM):
C1:
PF061199=NIDO=PU(81.1=98.7)
A:
NA
C2:
PF061199=NIDO=PD(17.9=7.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]