BtaINT0101767 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021945 | NID2
Description
Bos taurus nidogen 2 (osteonidogen) (NID2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102065]
Coordinates
chr10:44968695-44976492:-
Coord C1 exon
chr10:44976260-44976492
Coord A exon
chr10:44969381-44976259
Coord C2 exon
chr10:44968695-44969380
Length
6879 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CTTTTTTCCTTTCTGTTTAGACA
3' ss Score
9.06
Exon sequences
Seq C1 exon
CTGAATACTTTCCAGGCAGTGTTGGCATCTGATGAATTTGACACCTACGCCCTCTTTCTTTATCCTGCCAATGGCCTTCAGTTCTTTGGAACACGCCCCAAAGAATCTTACAACGTCCAGCTCCAGCTTCCAGCCCGGGTGGGCTTCTGCCGAGGAGAGGTTGATGACCTGAATAGACAGGGACCATATTTCAGCTTGACTAGCACTGAACAGTCTGTGAAAAATCTCTACCA
Seq A exon
GTAAGTAGCATAGGGCTTAAGCCCTTTCTTGTTGGAATGTAAGGACCCTTAGGAGCTACCCAAACTTCAGTGGCTCTAAGACCATTAAATAGTATCTTGGTAGTTTCTAACTAAGCAAGGCATCAATGTCAAAACCAGGAACTAGACTAGGCCCTGGGAGGAGCAAGTTGACCAAAATATAAAAGGTTCGTTATTTTTCCTGCCGTATTGGCTAGAGATACCAGAAACCAAACTGTGTGTGTGAGTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTATATGTGTGTGTGTGTGTATGTGTGTGTTAGCACAGCCACTGAGGCTTGCTATGGAAAACATTGCTCTTGGAACCACATAAAAATATTCAGTAATATAACTGCCCAGGTTGAGGTTTTTCCAGGTTAATCGTTTCACAGCTGGAAATGTTGTAAGTTAGTCTTTTATACAGATAGGTGTTAAAAGTTAAATTAAGAGTTGTGTAATTTGGAAAAAAAAGAGAAAAACCAACAAACAGATTGCTAGGGTTTTGGAAGTCTTGGGATTTCTCAATGGCTTCATTATCTGAAATCGTCTGGATGGGTTTTTCATGAAATGCCTGGAACTGGGCACATTCCTTAGTCCCATCACGTGAGCGCACTTTGCTTGTCCACATCATGCTCAGTATCTGGGTTGGCATCAGTTGATATTTACTCATTTCTGGGCTTAAAAAAAATCTCTCTGCTTTTATGCTTCCCTGAATACGGGTCTACAAGCTGGACAGAATGAGATTACTGGGTACTGGAACACCTTACACTTTTGCATGCCATCCGCTCTACTCAGAGACCAGAGAGCGGGCCCTACAGCCAAACAGGGTTACTCAGAGCTGACATTTATGGAGAGCTTACTGTTTGCCAACATTATGCTAAACACTTTCCAGAAGTTCTCTTAATTAAAACTCAACAAGAGTCTCAGGGGGTAAGTTCTGTTCTTTTGTTGATGTGACAAATGAGCTTAGGAAAGTTAAATTGCCTATAATCTCAAAGTTATGAAGTGGCAAAGCCAAAATTCAAGCACGAGTCTGGAGCTCTGAACTACTGTTTTTTTTATGCTGAATCCTGGCTTGCTTTCCCATTCTCAGGACTCACATTAGGCATCTTATGGGCTCCACTGAGGTTGCCTTTTAGTCTTGACTCTGGAGAAAACTTATCTCCTTGCTTTTTCTGCCCTGGCTCCACCACCCTCTTCTCTGGAGCCCATGGATTCTCTGCTTTTCAGACATTATCCAAGCGCTGGAAAGACAAAGATGTCTAAGGCCTAGGCCCTGTATACTAGCAGCCTGCATTCTCCTAGACTAGATGGAGGAGCAGTTTGACAGTTCCAGAGCATGGGACTAGGTGCTAACACCGCCTCAGGGTACAGGAGGCAGTGGAGGCCAAAAAGCCTGTGGGAAAAAGCAGTTATGCTTCCCCGCCACAGCCGTAAAGGCCCCTAAGAACTCACATAGGCACACATGGACACGCAGACTTGTACACATATACACTGCTTCCATTTACCTTCCTCCATGTGGCTCAATGGTAAAGAATCCACCTGCCAAGGCAGGAGATGTGGGTTCAGTCTGTGGGTTGAGAAGGTCACCTGGAGGAGGGCATGGCAACCCACTCCAGTGTTCTTGCCTGGAAAATCCCATGGACAGAGGAACTTGGCAGACTGCAGTCCATGAGGTCACAAAAATCAGCCATGACTTAGTGACCAAACAATAGCAACAACGCCTACCTCATCTTTGTCTTTCATGCTTCCTGGAAACCTCCGAGTTGCTTGATTGCAAGTGGAAGATAGGGGGCCAGAATGACTGGCAGAAGAAGTTTTCTTTAGTAAAATCTGTTTAGTGTATAAAAACTAAAATAAGGTGCAAGTAATGCTGATGATTGTGAAATAAAAGTAAAAATCACCCATTATCACTGCTTCAAAGTGATAACCATTATTAATAGTCATTTCAGAAGTTTAGGTGTATACAAAACCTTTTTAAAACCAAAAAGGTTCTTTTGTTATACATATGCAATCTTCCCATTTACCACTGTCTTATGGACATCTTTCAGTAAGATATCTTTATATTATTATTTGAAGGCTATAAAACATGGCATCATATATGGCCTATATTATTAAAACAATAAACTGATGAACATTTAAACTATTTCTGGTTTTTCCTTGTATAATTATTGTTGCAGTAAACAAAATAATATACATTGTTTGGATGCTCATTTGTCTTAAAGATAAATTCTTAAAAGTAGAATTGCTGAGAAAAGGTATATGCAGTTTAACATTTTAGTGCACGTTAACCAAATCACCCTTCAGAAACCCTGCACCAGCTTACAATCCCACCAATAATGGAGAGCTGTGATTGACAATGTTCATTTCCTACAGGCTTCTAATCTTTTTAATATTTGTGAATCTGATAGGTGTAAATGTTCATATTTTCACTCTAATTTTTATGATTACTGGTAAAACTGAGCACCTTTTCAATGGTTAATAGCCATTTCTTTGCTCTTTTCTACTGAGGTATTTACAGAGATCTTTTACAAATAAGAAAAATCTAGTAAAAATATTTTCTCTTAAATGCCATCCATATTTTTATCCAGTTGTTCATCTTTAAAGGTAGTTACGATCTAAAAGGTATAACTTTAGGGTTGTCAAAGTTATTGGCCTTTTCCTTTATGATTTCAGGTCTTGGTATTATTCTTAGGAAGGCCTTTTCTACCTCCAAATGATAGAACAGTTCCCCAACTTAATCCTCTATTTTACTTTTTTCTTTCTTCTTTCCTTCCCTTCTTCCTTCCTTCATTTTTTTCTTTCCTCCCTCCCTCTCTCCTTTCTTTCTTTCCTTCCCATTATTACAAGATATTAATATAGTTCCCTGTGCTATCCAATAGATTCTTATTGGTTATCTATTTTATGTATAGTAGTGTGCATGTGTTAACCCCAAACACCTTATTTATCCCTCTCCCACTTTCCCCTTTGGTAGCTGTAAGTTTGTGTTCTGTGTCAGTGTCTTTCTGTTTTGGAAGTAAGTTCATTTGTGTCTTTCTCTTCTTTTAGATTCCACATATCAGTAATATCATATGATATTTTTCTTTGTCTGGCTTACTTCATTTAGTGTGATAATCTCTAGGTCCATTCATGTTGCTGCAAATGGTATTCAGTTCAGTTCAGTCGCTCAGTCATGTCCGATTCTTTGCGACCCCATGAACCGCACCACGCCAGGCCTCCCTGTCTATCTCCCTGTCCATCACCAACTCCCAGAGTCCACCCAAACCCATCTCCATTGAATCGGTGATGCCATCCAACCATCTCATCCTCTGTTGTCCCCTTCTCCTCCTGCCCTCAATCTTTCCCAGCATCAGGGTCTTTTCAAATGAGTCAGCTCTTTGCATCAGGTGGCCAAAGTATTGGAGTTTCAGCTTCAACATCAGTCCCTCCAACGAACACCCAGGACTGATCTCCTTTAGAATGGACTGGTTGCATCTCCGCAGTCCAAGGGACTCTCAAGAGTCTTTTCCAACACCACAGTTCAAAAGCATCAATTCTTCAGTGCTCAGCCTTCTTTATAGTCCAACTCTCACATCCATACATGACCACTGGCAAAAACCATAGCCTTGACGAGACGGACCTTTGTTGGCAAAGTCATGTCTCTGCTTTTGAATATGCTGTCAAGTTTGGTCATAACTTTCCTTCCAAGGAGCAAGCATCTTTTAATTTCATGGCTGCAATCACCATCTGCATTGATTTTGGAGCCCAGAAAAATATAGTCAGCCACTGTGTCCGCTGTTTCCCCATCTATTTGCCATGAAGTGATGGGACCAGATGCCATGATCTTAGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCAGTCTCCTCTTTCACTTTCATCATTACTTCATTCTTTGTTTATGGCTCAGCAATATTCCATTGTGTATATATATATACACCACATCTTTATCCATTCATCTGTTGATGGACATTTAGGTTGCTTCCATGTCTTAGTTATCGTAAATAGTGCTGTTATGAAAATTGGAGTGCATGTATCTTTTCAAAGTATGGTTTCTCTGCATATATGCCCAGAAGTGGGATTGCTGGGTCATATGACAGTTCTATATTTAGTTTTTTAAGGAACATCCATACAGTTCTCCATAGTGACTGTACTGATTTACGTTCCCACCCACAGTGTAGGAGGGTTACTTTTTCTCCATGCCCTCTCCAGCATTCATTATTTAAAATTTCAAAAATATGCAGAAAAGTGGAGGTAATCTAGATTTACAAGCTGTTGACATTTTGCCATCTTAATAATTTTTTTCTTTTTTATGTTACTAATTTAAAGTAAGTGACACCCATCATGCCACTCTCCCCTCAGTGCATCAGTATGCATTTTTAAAAAATAAAATTCTCCTAGTCAATAGAATTATTTTCTTCCTCAAACTTGTCTTATAAGTTTAGAGGTCATAAATTATATAATTCATAATGTGTTTGTAATAATTCTCCTTCTGCACATTTAAATATGAATGTACACATTTGCATTTTTTGAGATTATTCTTTTTTGTCTCCTAGAAAACAGTAGTTACTAAGCACTTATTATATGCAGGGCCCCATGCTGAACATTTTATGTGATTTTCTAGCTTAATCCTAATACCCCAGGGAGGAAGGCACTGTCCATCTCATTTTGTAGCCTTGTTTTCTTTCTAGGAAATAAATTAACTTCTTTCTATCGCTAAGCTTTCCAAATGACCTTGGATTTTAGGATAAACTCAAACTGGCTTCTTTCCTATCATTTACAATGACAAAAGCCAGGGTAGTGATTCATATTTAAGTAGAAGGCTATTTTATTTAGCTTTTATCTGCCATAATTTGTACTTTCCTACTCTTTGAAGCTTTTATAGTTCTCTGTTTCTAACTTCAAGAAGAAATTTCACAGCTGCAACACCTCCGATGTGATAACAAACTCAACATCCTCAGATTTTCTGAGTCCTCTCTTATCTTCTCTAACATTCCTTGCTTGCTTGCCAGAAAGCACCAGCATTTAATTCTTAGAACTTACCGAGTTTACAAAGCATATTGCACAAAGGATCAAAACTTTTTCTTTCTACACTCGTTTCCCTAAACTAATCGCAACAGCAGTGGTGGTAACAACATGTGAAGGGGTGGGGACTGATTGATTCATGGAATTGTGTTAATAAATATTATTGCTACAGAAATCCACATGAAGGTGAGCAATACCAGCCCAAATGAGCAAAATTCTCTTGTCCTCATATGAGTCAATGAATTTCCTGTTAATATTATTAGTCATTAACTGACTTCTCATGGACTGGCTGCAGAGAAAATCCCACAACACGAGAGACTGAGAGCCTGGTGTTTGGTCCGTATACCAGAGCATATAGAAATGGGTGTATTCAAGCCAGCCAGACCCTTTCTTTCTTCGGGTTTTTCCTTTTTTTTTTTTTAATTGTTTGTGGGGTTATTCTCTTTAGAATGTATCATTGACTAAAATAATGGGTCGCTGGGATATTTGGAAGACTGAATGGAGCCTGTGTTCTTTTCTAGTGGAGGTGTACAAGTGAGCTCCCTGGCTCCAAATGTTTCTGGACGCCTCTTTCCTGTGACCCGTGGCAGTTAATTAACCTGCTTTCTTACCCCTCCCCCCGACTCTTACCTTTGTTCTACATCTGCTCAACATTTTTGATACTTAGGTATTTCTATTTCTTTGAGTTTTTTGACATTGATTTACCAGGGTTTGTGAATTAGTTAATTGAATAATCCATGTGACTAAACAGCGAAATGTTTCTGACATTCTGTAGTGTAAAAGAATTAGGATGTGGACTGACTATGGTGTACTGATTTTCTGACATGATGTGGATATTCAGAGCATAGGCTTTGGTGTTATTGCTGAATTCAAGTCCAAGCTCTGCCAATTATTATTGTGCAACCTTAAGAAGATTAGTTAACCTCTCTAAACCTGTTTTCTCCTCTGAAAACTCAGGCATATCACTGCCTCTACCTTGCAAGTTGTGTTGAAGAATGTTAAGCACTTGGCATGTAACTCTCAAATAAAAAGGACTCATTATTATTTAGGTGTTTGGCAGAAATGTTTAAGCATATGTTTTCTTGAGTTTGTTAAAAGTGTGTGTGTGCTTGCGTTCAGTAGGTAAGTCATGTCCAACACTTTGTGTCCCCATGGACTGTAGCCCACGAGGCTCCTCTGTCCATGGAATTCTCCAGACAAGAATACTGGATTGGGTTGCCCTTTCCTTCTCCAGGGGATCTTCTCAACCTAGGGATTGAACCCATGTCTTCTGCACTGGCAGGAGGCTTCTTTACCACTGAGTCACCAAGGAGTGTTAGTTGCTCAGTCATGTCCGACTCTTTGCCACCCCATGGATTGTAGCCTGCCAAGCTCCTCTGTCCATGGAGTTCTCCAAGCAAGAATACTGGAGTGGGTAGCCATACCCTTCTCCAAGGGATCTTCTCAACCCAGGAATTGAACCCAGGTCGCCCATGTTGTGAGCAGATCCTTTACCATCTGAGCTAGCAGGGAAGCCCTTGTTCCCTAGGTGTTTTCATATAGCCATTTAGATAAAACATGTAGTACAGAATTCTGATTTGAGTGTCCAGCAGTAGGCATATGGCCTTTGAAACCCATTGTTTAATAAGAGATTGTTTGCATCAAAATTCCAATATAATGCTTTTCAGTTATCATGTAAGTCTGGCTTTGTTTGGTTCCCTGCCAGTGAAAACTTAATCTGATCTGAATAGTCTTTCAGTTTTCAGATAAATTGCTCACCTTTGTAAGAAGGTGGTGGGTGGACACGTGTGCTACAATATCTTTTTTCCTTTCTGTTTAG
Seq C2 exon
ACACAGCAACCTGGGCATTCCTGGAGTGTGGGCTTTTCACATAGGCAGCATTTCCCCGTTGGACAACGTCAGGCCAGCAACCATTGGAGGAGACCTTTCCAAAGCCCGTCCTTCAGCTCCTCTGGGACAGTCCTTCAGCCATGCTGTGGCCCTGGAGGATGACTACACTCAGGACACTTTGGATGATTATGATGAGAATGAGGAGGAAATCGAATACCCGCCTAGTGAACCAGCAGAGGCATCAAATGGCCACAGCTCAGTCGATGTTTCTTTAGGAGGTAGGATCTCTGCTCCAGATTCTGACCTGGCCTCCCCTGAGCCACGTTTAGCATCTCGGAGTGGGCCTGAAACAGAATCTTCCCCCTTGGACCCTCACACCAAAGAGAGGAGACTTCAGGGGGAGACCGATGCCCCAGATTTAAAAGGGCGAGTCGAGTCTTCTGAACAGCCAGGGACCAGAGTCCCTGCTCCTCCAAAGACTGAAGGAGATTCACCTGCTCCTCCCGGGGAAGCCCCGCCGCCCTCCCCAGAGGGAGGGGCTGGGCCAGCGGACCAGGATGCTCTTCCAGCCCATCCCGGAGGAGAGGCGGCCCTTCCCAACTACCCTGGGCCCGACCACGGCCCGCACCTGGGTCAGCGGGGGCAAGTGGTGGGGGTGGAGGACGACATCAGCTCCAACACTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021945:ENSBTAT00000029257:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.883
Domain overlap (PFAM):
C1:
PF061199=NIDO=PU(81.1=98.7)
A:
NA
C2:
PF061199=NIDO=PD(17.9=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development