HsaINT0113503 @ hg19
Intron Retention
Gene
ENSG00000087303 | NID2
Description
nidogen 2 (osteonidogen) [Source:HGNC Symbol;Acc:13389]
Coordinates
chr14:52520738-52527074:-
Coord C1 exon
chr14:52526842-52527074
Coord A exon
chr14:52521040-52526841
Coord C2 exon
chr14:52520738-52521039
Length
5802 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
ACTGTTTCCTTTTTATTTAGACT
3' ss Score
8.3
Exon sequences
Seq C1 exon
CTGAACACTTTCCAGGCAGTTTTGGCATCTGATGGGTCTGATAGCTACGCCCTCTTTCTTTATCCTGCCAACGGCCTGCAGTTCCTTGGAACCCGCCCCAAAGAGTCTTACAATGTCCAGCTTCAGCTTCCAGCTCGGGTGGGCTTCTGCCGAGGGGAGGCTGATGATCTGAAGTCAGAAGGACCATATTTCAGCTTGACTAGCACTGAACAGTCTGTGAAAAATCTCTATCA
Seq A exon
GTAAGTAACATTGAGCTGAAGCCCTTTCCTATTTGAATATAAGGACTTTTAGGAAGTACCTGAACACAAGTGACCATAAGACCATTACATAATATATTGGTGGCTTCTAAGTAAGGCATCAAGTCAAAACCAAGGAACTAGATTCAACCCTGGAAGGATCAAGTTCACCAAAACATAAAAGGTCCTTTATTTTTCCTGCTCTATTGGGTATAGATACTGGAAACAGAACAGTATGTGTGTGTATTTGTAGAGCCACTGAGGCTTGCTATGAAAAACATTGCTCTTGGAACCACATAAAAATATCCAGTCATAAACTGCCCAGTTTGAGGTTTTCCAGATTAATCATTTCACAGGAGGAAACATTGTGATTTAGTCTTTTGGACAGATACTGTTAAACATTAAATTGAGCAATGTAATTTGCAGGAAAAATAACTAAGATTTATAGGTTTCCAGAAGTCTGAGGATGTCTCTCTGGCTTCATTACCTAAAATGAATTGAACCCATTCCTTAGACTCATCAGTGTCTGCCCATAATGGGCATTTAATAAATAGATGGGTGAATGAATGAATGATCCAGAGGGCTTACTTAGCTAGTGCAATAATAAGCTCTTCTGCATTTTGCCAGTACAGATAGTGCCAGTAGGATATTTATTGACTTCAGGGTTTTTTGGGGGGTGTGTGAGGGGAGGTAGGGGTGCCCTCGCTTTTATTCGTTTCCTGAATATAGAAGCCAGATAGAATACATTGGTTACTTCCTGGCCTCCTTTAACTGCTTCTTGACTTCATTAAATCAATCCTGGGTAGGTATAGAAACACCTTACACTTTTAGCATGCCATCCACTCTGCTCGGCTACCAGAAAGAGACCACTATAGCCAGGTTTGCTTACTCAGAGCTGACATTTATTGAAAACTTACTACTTGCCAAGCATCATGCTAAACACTTTCCAGATGTTATCTTAATTAAAACTCACAAGAATTGTAGGTTAGTACTACTATTTTCCCAGTTTTACAGAGGAGCTTAGGGAAGTTAAGTAAATTGCCTATGATCTCAAAGTTAAGTGGCAAAGCCAAAATCCAAGCTCAAGTCTGGAGTGCTGAACTACTTATTTTATCTTATGCTGAGTCCTTGTTTCCTTTCCCATCCTTATGATCCACATTGGGCATCTTTAGGGCTCCATCTAGGCTGCCGCTTAGTCTGGACTCTGGAGCAAACTCAGTTCCTTACTCTCCCTCCTCTGGTTCCACCCTCTCTTCTACTTGGGAGCTCATAGATTTATTATTCCATAGATTTATTATTATAGAGAGGTCACAATGGCCAAGCACATGGAATACAAAGATTTCTAAGACACTGGTCCTGCACATCAGCAGCTTGTACCCTATTAGGGTTGATAGACAAATAGATCAACAATTACAGAGCCCTGGGTAAGTGCTGGCATCTACACAGGAGACAGGAGACAGTGGGGCCAAAAGACCTGTGGGAAAAAGCAGTTGTGTTCCCTGAGCAGAGCCATAAAGGTCTCTTGGAACTAACATCCACAATCACGTGTGACACACAAACACACAGACAGCATTTCCACTTACCCCCTTTCATGCCTTCCCTCATTTTTATCTTTGATACTTCCCAGAAATCTCTGAATTGCTTGGCGAAAGCAGAGTAAGATATGGGGCCAAATGACTCACGTATTTTTCTTTATTGTAATCCATGCTTAATACAAATAATAAAGTACAAGCAATGCAGAATAATGTGAAATAAAAGTAAAAGTTATCCATGATCACTACTTCAAGTGATAACAAGTGTTAATGGTCCTTCTAGAATTTAGGTATATACAAAACTTTTAAAACCAAAATGGTTCTTTTGCTATGTAAGTGGTGTTTTCACATTAATCACTTCTTATAGGGGTCTTTTAGTCAGATGTCTGTCTATACTACCATTTTAAGGCTACAAAACGTTATGTCATATATGTATAAAGACAGCTTATTAATGAACATTTCATGTATTTCTGATTTTTCTTGTTATAAATATCATTGCAGTAAACAGCATAATAAACATTGCTCACATTCTCGTTTCTCCCTAAAACAAATTCTTAAAAGTGGAATTGCTGAGAAAGGGTGTATGATTTAAAAGTTGTACATTTCAGATTGTCAAAGTTACTGGTCTTTTCCTTTCTGATTTTGGATCTTGTTGTTATTCTTAGGAAGAACTTCTGTACATCAAATTTATAGAAATGTCCTTCAATATAATCTTCTATTTCACTTTTCATTATTTAAAATTTCAAAAATATACAGAAAAGTGGAGAGAATAACTAGATGAACACCCAAATGCCCATCACCTAGATTTATACATTGTAAACATTTTGCCATATTCATTTTTTTGTTTGTTTACATTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGGTTCGCTCTTGTCGCCCAGGCTGGAGTGTAGTGGTGTGATCTTGTGCTCATTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAGTAGCTGGGATTACAGGCGCCCACCACCACACCCGGCTAATTTTTGTATTTTTCGTAGAGACTGGGTTTCATCATGTTGGCCAGGCTGGTCTAAAACTCCTGACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAAGTGCAGGGATTATGGGTGTAAGCCACCATACCCGGCCTGTTTAAATGTTTTAAAGTAAGTCACAAACATCATGCCAGTTCATTGCTAAATGCCTTAGTATGCATCTCTTAAGGGTAAAGTTAGGCTGGGCAAGGTGGTTCTAATCCCAGCGCTTTGGGAGGCCAAGGTGGGAGGATTGCTTGAGCTCAGGCATTCAAGGCCAGCCTGGGCAACATAGCGAGACCTAATCTCTACTAAAAATTTAAAAAATTAGCTGGGTGTGGTGGTGTGCACCCGTAGACCCAGCTATTTGGGAGGCTGAAGTGGGAGGATCACTTGAGCCCAGGGGGTTGAGGCTACAGTGAGCCATGATCAATCACACCACTATGCTCCAGCCTGGGTGACAGAGGGAGACCCTACCTCTAAATAAATAAGTAATTAAGAGTAAAGTTATTTTCCTAGTCAATTGTTTTCTTCCTCAAATTTGTCTCACAACTGTGAGCTCAAAGGTCATAAATTATATAGTTCATAATGTTTGTCATACTCTTCCTCTGCAAATTTAAATACGAATTCACACGTGTATATTTTGAAATCATACTTTTCTATCTTCTGGAAGACAAGACAGTAGTTAATAAGTATTTATGATGTTTAGGGCCAGTGATAGGCATTTTATTTATTTATTTTTTTGAGATGGAGTCTCGTTCTGTCATCCAGGCTGGAGTGCAGTGGCATGACCTCGGTTCACTGCAACCTCTGCCTCCTGGGTTCAAGCTTTTCTTCTGCCTTAGCCTCCAGAGTAGCTGGGATTACAGGCACACACCATCACACCTGACTATTTTTTTTGTATTTATAGTGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTAACCTCAGGTGATCCGCCCACCTTGATTTCCCAAAGTGCTGGGATTTCAGGCATGAACCACCGTACCTGGTCAGTGCTAGGCATTTTAATGTGGTTTTCTCACTTAATTCTCCTAACAACCCAGGGAGGAAGGCATTGTCATCCCATTTTGTAACCCAATTTTCCTTTGTAGAAATAAATTAAGTTCTTTCTATTACTAAGCTTTCCAAATGACCTTGGATTTTAAAATAAACTCAAATTGGTTACTTTTCCATTATGCATAATGACAAAACCCAGATAGTGATTTATATATAATTAGAAGGTTATTTTATTTAGCTTTTATTGGCCATAATCTGTATTTTTCCACTGTTTGAAGATTTTATAGTTTCTGTTTCTAACTTCAAGAAGAAATTTCATAGTTGCACCACCTCTAATGTGATAATAAACTCAATATCCTCAGAACTTCAGGATTTTCTCCTACTGTCTTTAGTTTTCCTTATTTGCTTGCCAATAAACACCAACATTAATTCTTATGAACTTAACAAATATGTATAGCATATTGCACACAAAATCAGTTTTTCTTTCTATGCTTTTTTCCCTAAATTTACCACAACAGTAACCACAGCATATACATATATGTACATGCATACACACACACACACACAAACACACACAAGAGAAAGACATTTTCAAATTGTACTGAAAAATATTGTTACTATAGAAATCCACATGAACATGATGAGTACCCACCCAAATGAAGGAAAATCTTTTGTTCTTATACAATTTAGTGAAGTTTTTATTATCTTATTAGGCATGGACTGTTATTCCTCATTGACTGACTTTTGAGGAAATTCCATTGCTTGGGAGAATGTGAGCATAGTGTTTTGTACAAATATCAGAGGAGTATACAAACTGGCATATTCAACCTAACCAGACTCTTGTTCACTCAAGTTTTCCCATATTTTTAGAAATCATATGTAGTTGTTCTCTTTAGGGTATACCATTGACTCTAAAATAATGGGTTATTGGGATATTTGGAAACTCAATGGAGTTCATGTTCTTTTCTCATGGAGAAAACGAGAGAGCTGTTTCCAGAAGTCTTTAAAAGACTTCTAAGCTACTTTCTTATTTGCTCCTTAACTTTTTCAGTGCAAAAACAAATTTTTTAGGTTTTGGCATTTGTATTTATTTGAATTTTTTTACATTGACTCACCATTCTTTGTGGATTAGGGAATTAATCAGTTCAAGTGAATAAACAATGAAATGTCTTTAATATTCTGTAGAGTAATGATAATTCAGATGCTTATTGACTGCAGTGTGTGGTATGGTTTTCTGTCATAATATAACATAGATGAGTAGAGCATGGGCTTTGGTGTTAACTGAATTCGGATCCAATTGTTTGTTATGTGACCTTCAGAAGATCAGTTAGCCTTTTAAAGCCTATTTTCCCCTCTATAAAATTGAATATGATCACCTCTATTTGCAGATTGTATTGAAGAATGTGAAACACTTGGCACAGGGAAGGGGCATCACCAATTCATGAAAGTATGTCGTAGTCATTTGGGTGTCAGTATTTGGTAGAGTTTTAAGCATACATTTTTAAAATGTGTTATGTTTCCAGACAAGTAGAGGAAGGATGAAACATTCCTACATTCCTTGTTTATTTTCAAATAGCCAGATTTTAGATAAACCATTTGGATTATGGGGCAGATTGATAATTTGATGATCTGGCATTCTGTGGCATACAGCTTTGAAACATAATGTTAAATAAAAGGTAGTTCACATCAAAAGTCCAGTATGATCCCTTTAGTTACCATGTAAGTCTGCTTTTATTTGGTTTTATATACCAGTGAAAACTGAACCTGATCTTAATAGCCTTTCAGGTTTTTTGTTTTTTTGAGACAGGGTCTCACTCTGCCACACAGGCTGGGGTGCAGTGGTTGCAACCAAAGCCCACTGTAACCTGGAACTGCTGGGCTCAAGTGACCCTCCTGCCTCAGCCTACTGAGTAGCTAGAAGCACAGGCATGTGGCACCATGCCTGGCTAAGTTTTTTAGAAAAGGGTTTTGTAGAGGCAGGGTCTCACTATGTTGCCTAGACTGGTCTCAAACTCCTGGGCTTAAGTCATCCTCCTACTTTGGCCTTGCAAAGTGCTGGGATTATAAGTGTGAGCCACCATGCCCAGCTGTCTTTCCGTTTTAAAATAAGTTGTTCACCTTCTAGGAAGGTGGGTGAATGGACACTTTTGTTACATTTGTTACAATGACTGTTTCCTTTTTATTTAG
Seq C2 exon
ACTAAGCAACCTGGGGATCCCTGGAGTGTGGGCTTTCCATATCGGCAGCACTTCCCCGTTGGACAATGTCAGGCCAGCTGCAGTTGGAGACCTTTCCGCTGCCCACTCTTCTGTTCCCCTGGGACGTTCCTTCAGCCATGCTACAGCCCTGGAAAGTGACTATAATGAGGACAATTTGGATTACTATGATGTGAATGAGGAGGAAGCTGAATACCTTCCGGGTGAACCAGAGGAGGCATTGAATGGCCACAGCAGCATTGATGTTTCCTTCCAATCCAAAGTGGATACAAAGCCTTTAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000087303-NID2:NM_007361:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.569
Domain overlap (PFAM):
C1:
PF061199=NIDO=PU(81.1=98.7)
A:
NA
C2:
PF061199=NIDO=PD(17.9=16.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)