RnoEX0060469 @ rn6
Exon Skipping
Gene
ENSRNOG00000018835 | Notch2
Description
notch 2 [Source:RGD Symbol;Acc:3188]
Coordinates
chr2:200277637-200281938:+
Coord C1 exon
chr2:200277637-200277747
Coord A exon
chr2:200277860-200278078
Coord C2 exon
chr2:200281746-200281938
Length
219 bp
Sequences
Splice sites
3' ss Seq
TTTCTCGTCGTCTCTGGAAGGTT
3' ss Score
6.7
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GCCTTAATTGTGAAATTAATTTTGATGACTGTGCCAGCAACCCTTGTCTGCACGGAGCCTGTGTGGACGGCATCAACCGTTACAGTTGTGTGTGCTCTCCGGGATTCACAG
Seq A exon
GTTTGCAATCTGCTTCTGTTCTGCTCTGAACCAGTTTCCTGTTTCCAGACCTTTGCTAAGTGGAAACACAGCACTTCCCTTAGCGTTTCAGGTCACGTGTTTCTTGCTACCTGAGAATTCCTAGCAGACTGTAACTTTCCGTCACTGTGCTGGAGTTAATGCCTCCAAAGCCACCTTTGTTTCCCTCCAGCCACTGCCTTCTGTAAAGCTGTGCCCAAG
Seq C2 exon
GGCAGAGGTGCAACATAGACATTGATGAGTGTGCCTCCAACCCCTGTCGCAAGGGTGCGACGTGCATCAATGACGTGAATGGTTTCCGGTGTATGTGCCCTGAGGGACCACACCATCCCAGCTGCTACTCACAGGTGAACGAGTGTTTGAGCAGTCCCTGCATCCATGGAAACTGTACTGGAGGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018835_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(5.3=5.3),PF0000822=EGF=PU(90.0=71.1)
A:
PF0000822=EGF=PD(6.7=20.0)
C2:
PF0000822=EGF=PD(6.7=3.1),PF0764510=EGF_CA=WD(100=55.4),PF0000822=EGF=PU(53.3=24.6)
Main Inclusion Isoform:
ENSRNOT00000025718fB9766
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTAATTTTGATGACTGTGCCAGC
R:
CCACTGAGACCTCCAGTACAGT
Band lengths:
292-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]