RnoEX0060870 @ rn6
Exon Skipping
Gene
ENSRNOG00000007607 | Nr4a1
Description
nuclear receptor subfamily 4, group A, member 1 [Source:RGD Symbol;Acc:620029]
Coordinates
chr7:142917596-142918587:+
Coord C1 exon
chr7:142917596-142917747
Coord A exon
chr7:142918123-142918319
Coord C2 exon
chr7:142918409-142918587
Length
197 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCCATTCAGTTCCAGGAA
3' ss Score
5.08
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
TTGTCCGGACAGACAGCCTAAAGGGGCGGCGGGGCCGGCTACCTTCAAAACCCAAGCAGCCCCCAGATGCCTCCCCTACCAATCTCCTCACGTCCCTCATTCGAGCACATTTGGACTCCGGGCCTAACACTGCCAAGTTGGACTATTCCAAG
Seq A exon
GAACTGGTGCTGCCCCGCTTTGGAAAGGAAGATGCCGGTGACGTGCAGCAATTTTATGACTTGCTCTCTGGCTCCCTGGACGTCATCCGGAAGTGGGCGGAAAAGATCCCGGGCTTCATTGAGCTTTCCCCAGGAGACCAAGACCTGTTGCTAGAGTCCGCCTTTCTGGAGCTCTTTATCCTCCGCCTGGCCTACCG
Seq C2 exon
ATCTAAGCCCGGTGAGGGGAAGCTCATCTTCTGCTCAGGCCTGGTGCTACACCGGCTGCAGTGTGCCCGCGGCTTTGGTGACTGGATAGACAACATTCTAGCCTTCTCACGGTCCCTGCACAGCTTGGGTGTTGATGTTCCTGCCTTTGCCTGCCTGTCTGCTCTGGTCCTCATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007607-'15-9,'15-8,16-9
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0010425=Hormone_recep=PU(32.5=91.2)
C2:
PF0010425=Hormone_recep=FE(31.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTACCAATCTCCTCACGT
R:
ATGAGGACCAGAGCAGACAGG
Band lengths:
254-451
Functional annotations
There are 1 annotated functions for this event
PMID: 22002310
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, glutathione s tranferase tag, pull down. ELM ID: ELMI002017; ELM sequence: AELSPA; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]