GgaEX6043343 @ galGal4
Exon Skipping
Gene
ENSGALG00000012538 | NR4A2
Description
nuclear receptor subfamily 4, group A, member 2 [Source:HGNC Symbol;Acc:HGNC:7981]
Coordinates
chr7:35532903-35534522:-
Coord C1 exon
chr7:35534359-35534522
Coord A exon
chr7:35533694-35533896
Coord C2 exon
chr7:35532903-35533081
Length
203 bp
Sequences
Splice sites
3' ss Seq
TTTTTAAAATGAATTTCCAGTTC
3' ss Score
6.01
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TGGTTCGCACAGACAGCCTCAAAGGCCGGAGGGGTCGCTTGCCATCCAAACCGAAGAGCCCCCAGGAGCCCTCTCCCCCCTCTCCCCCGGTGAGTCTGATCAGTGCGCTGGTGAGAGCCCATGTCGACTCCAACCCGGCTATGACCAGCCTGGACTATTCCAGG
Seq A exon
TTCCAGGCTAACCCCGACTACCAGATGAGCGGGGACGACACTCAGCACATCCAGCAGTTCTACGACCTGCTCACCGGCTCCATGGAGATCATCCGCGGCTGGGCAGAGAAGATCCCCGGCTTCACCGACCTGCCCAAAACCGACCAGGATCTGCTCTTCGAGTCCGCCTTCCTCGAGCTCTTCGTGCTGCGCCTGGCATACAG
Seq C2 exon
GTCGAACCCCGTGGAGGGGAAGCTCATCTTCTGCAATGGGGTTGTCCTGCACCGGCTGCAGTGCGTCCGCGGCTTCGGGGAATGGATCGATTCCATCGTTGAGTTTTCCTCCAACTTGCAGAACATGAACATCGACATCTCGGCATTCTCCTGCATTGCTGCCCTGGCCATGGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012538-'4-6,'4-5,5-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(0.5=1.8)
A:
PF0010425=Hormone_recep=FE(33.8=100)
C2:
PF0010425=Hormone_recep=FE(30.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGCCATCCAAACCGAAGA
R:
GGGCAGCAATGCAGGAGAAT
Band lengths:
292-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]