DreEX6021003 @ danRer10
Exon Skipping
Gene
ENSDARG00000044532 | nr4a2b
Description
nuclear receptor subfamily 4, group A, member 2b [Source:ZFIN;Acc:ZDB-GENE-040718-103]
Coordinates
chr6:12229736-12230502:+
Coord C1 exon
chr6:12229736-12229901
Coord A exon
chr6:12230040-12230242
Coord C2 exon
chr6:12230324-12230502
Length
203 bp
Sequences
Splice sites
3' ss Seq
AGTTTTGTATTACATCTTAGTTT
3' ss Score
4.37
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AGTTGTCAGAACCGCCAGCTTAAAAGGTCGAAGAGGTCGCCTCCCCTCCAAACCTAAAAGTCCGCAGGATATCCCTGTCTCTTTCACACCCGTCAATCTCCTGAACGCACTAGTGAGAGCGCACATAGACTCCAACCCCTCCATGGCCCGTCTGGACTACTCTAAA
Seq A exon
TTTCAGACGAGTCCGGAGTATCACAGTGGAGGAGATGAATCTCTGCACATTCAGCAGTTCTACGATCTACTCACTGCCTCAATGAGCATCATTCGCGGATGGGCCGAAAAAATCCCCGGCTTTACCGAGCTGCCCAAATGCGACCAGGAGCTCCTTTTCGAGTCTGCCTTCCTTGAACTCTTCGTGTTGCGGCTGGCGTACAG
Seq C2 exon
ATCTAACCTGCCAGAGGACAAACTCATCTTTTGCAACGGAATGGTTTTACACAAGTTGCAGTGCGTGCGAGGCTTTGGGGAGTGGATCGACTCTATTGTCGAGTTTTCTTCTAATCTTCAGAGCATGAGCTTAGACGTGTCTGCCTTCTCCTGCATAGCCGCTCTCACCATAGTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044532-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(1.4=1.8)
A:
PF0010425=Hormone_recep=PU(35.1=97.1)
C2:
PF0010425=Hormone_recep=FE(31.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCAGCTTAAAAGGTCGAA
R:
AGGCAGACACGTCTAAGCTCA
Band lengths:
301-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]