MmuEX6101381 @ mm9
Exon Skipping
Gene
ENSMUSG00000026826 | Nr4a2
Description
nuclear receptor subfamily 4, group A, member 2 [Source:MGI Symbol;Acc:MGI:1352456]
Coordinates
chr2:56960972-56962688:-
Coord C1 exon
chr2:56962525-56962688
Coord A exon
chr2:56961474-56961676
Coord C2 exon
chr2:56960972-56961150
Length
203 bp
Sequences
Splice sites
3' ss Seq
TTTTTAAAATGAAATTCCAGTTC
3' ss Score
3.59
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TGGTTCGCACGGACAGTTTAAAAGGCCGGAGAGGTCGTTTACCCTCGAAGCCGAAGAGCCCACAGGATCCCTCTCCCCCCTCACCTCCGGTGAGTCTGATCAGTGCCCTCGTCAGAGCCCACGTCGATTCCAATCCGGCAATGACCAGCCTGGACTATTCCAGG
Seq A exon
TTCCAGGCAAACCCTGACTATCAGATGAGTGGAGATGATACCCAACATATCCAGCAGTTCTACGATCTCCTGACCGGCTCTATGGAGATCATCAGAGGGTGGGCAGAGAAGATCCCTGGCTTTGCTGACCTGCCCAAAGCCGACCAGGACCTGCTTTTTGAATCAGCTTTCTTAGAATTATTTGTTCTGCGCTTAGCATACAG
Seq C2 exon
GTCCAACCCAGTGGAGGGTAAACTCATCTTTTGCAATGGGGTGGTCTTGCACAGGTTGCAATGCGTGCGTGGCTTTGGGGAATGGATTGATTCCATTGTTGAATTCTCCTCCAACTTGCAGAATATGAACATCGACATTTCTGCCTTCTCCTGCATTGCTGCCCTGGCTATGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026826-'8-9,'8-8,9-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(0.5=1.8)
A:
PF0010425=Hormone_recep=FE(33.8=100)
C2:
PF0010425=Hormone_recep=FE(30.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACAGTTTAAAAGGCCGGA
R:
CAGGAGAAGGCAGAAATGTCGA
Band lengths:
308-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: